Difference between revisions of "PWY0-1561"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1623 RXN-1623] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-acylglycerol-3-phosphate_o-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1623 RXN-1623] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 1-acylglycerol-3-phosphate_o-acyltransferase
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** pyridoxal 5'-phosphate biosynthesis I
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.51 EC-2.3.1.51]
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* Synonym(s):
 
* Synonym(s):
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** vitamin B6 biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''8''' reactions in the full pathway
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** 1 [[ACYL-SN-GLYCEROL-3P]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[L-PHOSPHATIDATE]][c]
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* [[DXS-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 a 1-acyl-sn-glycerol 3-phosphate[c] '''+''' 1 a long-chain acyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 a 1,2-diacyl-sn-glycerol 3-phosphate[c]
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*** [[Tiso_gene_17311]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_13959]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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** EXPERIMENTAL_ANNOTATION
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*** [[manual-primary_network]]
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***EC-NUMBER
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PNPOXI-RXN]]
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== Pathways  ==
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** 1 associated gene(s):
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* [[PWY-5667]], CDP-diacylglycerol biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5667 PWY-5667]
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*** [[Tiso_gene_1471]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[TRIGLSYN-PWY]], diacylglycerol and triacylglycerol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRIGLSYN-PWY TRIGLSYN-PWY]
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*** [[annotation-in-silico_annotation]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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* [[PSERTRANSAMPYR-RXN]]
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* [[orthology]]:
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** 2 associated gene(s):
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** [[pantograph]]:
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*** [[Tiso_gene_15686]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_17123]]
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* [[annotation]]:
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** 3 reconstruction source(s) associated:
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** [[pathwaytools]]:
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*** [[annotation-experimental_annotation]]
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*** [[experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.262-RXN 1.1.1.262-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ERYTH4PDEHYDROG-RXN ERYTH4PDEHYDROG-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ERYTHRON4PDEHYDROG-RXN ERYTHRON4PDEHYDROG-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PDXJ-RXN PDXJ-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8447 RXN-8447]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19709 19709]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02241 R02241]
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{{#set: common name=pyridoxal 5'-phosphate biosynthesis I}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=vitamin B6 biosynthesis}}
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{{#set: common name=1-acylglycerol-3-phosphate_o-acyltransferase}}
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{{#set: reaction found=3}}
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{{#set: ec number=EC-2.3.1.51}}
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{{#set: total reaction=8}}
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{{#set: gene associated=Tiso_gene_13959}}
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{{#set: completion rate=38.0}}
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{{#set: in pathway=PWY-5667|TRIGLSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 17:55, 18 March 2018

Pathway PYRIDOXSYN-PWY

  • taxonomic range:
  • common name:
    • pyridoxal 5'-phosphate biosynthesis I
  • Synonym(s):
    • vitamin B6 biosynthesis

Reaction(s) found

3 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY0-1561&oldid=20684"