Difference between revisions of "Heparan-sulfate-L-iduronate"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15733 RXN-15733] == * direction: ** LEFT-TO-RIGHT * common name: ** folic_acid_synthesis_protei...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** udp-glucose_4-epim...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15733 RXN-15733] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** folic_acid_synthesis_protein
+
** udp-glucose_4-epimerase_5
 +
** udp-glucose_4-epimerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.6.3 EC-2.7.6.3]
+
** [http://enzyme.expasy.org/EC/5.1.3.2 EC-5.1.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[CPD-16953]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-16954]][c]
+
** 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 [1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate[c]
+
** 1 UDP-&alpha;-D-glucose[c] '''<=>''' 1 UDP-&alpha;-D-galactose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11659]]
+
* [[Tiso_gene_9823]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_3236]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15395]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_10797]]
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6148]], tetrahydromethanopterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6148 PWY-6148]
+
* [[PWY-7344]], UDP-D-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344]
−
** '''2''' reactions found over '''14''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 +
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
 +
** '''5''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-synechocystis]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=folic_acid_synthesis_protein}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22168 22168]
−
{{#set: ec number=EC-2.7.6.3}}
+
* LIGAND-RXN:
−
{{#set: gene associated=Tiso_gene_11659}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
−
{{#set: in pathway=PWY-6148}}
+
* UNIPROT:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P35673 P35673]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P22715 P22715]
−
{{#set: reconstruction source=esiliculosus}}
+
** [http://www.uniprot.org/uniprot/P21977 P21977]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P24325 P24325]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
−
{{#set: reconstruction source=in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/Q57664 Q57664]
 +
** [http://www.uniprot.org/uniprot/P55180 P55180]
 +
** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
 +
** [http://www.uniprot.org/uniprot/P56997 P56997]
 +
** [http://www.uniprot.org/uniprot/Q59083 Q59083]
 +
** [http://www.uniprot.org/uniprot/Q44016 Q44016]
 +
** [http://www.uniprot.org/uniprot/Q45291 Q45291]
 +
** [http://www.uniprot.org/uniprot/P96995 P96995]
 +
** [http://www.uniprot.org/uniprot/P45602 P45602]
 +
** [http://www.uniprot.org/uniprot/P18645 P18645]
 +
** [http://www.uniprot.org/uniprot/P26503 P26503]
 +
** [http://www.uniprot.org/uniprot/P40801 P40801]
 +
** [http://www.uniprot.org/uniprot/Q05026 Q05026]
 +
** [http://www.uniprot.org/uniprot/P56985 P56985]
 +
** [http://www.uniprot.org/uniprot/Q51148 Q51148]
 +
** [http://www.uniprot.org/uniprot/Q56093 Q56093]
 +
** [http://www.uniprot.org/uniprot/Q42605 Q42605]
 +
** [http://www.uniprot.org/uniprot/Q60109 Q60109]
 +
** [http://www.uniprot.org/uniprot/P72903 P72903]
 +
** [http://www.uniprot.org/uniprot/P72915 P72915]
 +
** [http://www.uniprot.org/uniprot/O66256 O66256]
 +
** [http://www.uniprot.org/uniprot/O64749 O64749]
 +
** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
 +
** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
 +
** [http://www.uniprot.org/uniprot/Q43070 Q43070]
 +
** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
 +
** [http://www.uniprot.org/uniprot/O65780 O65780]
 +
** [http://www.uniprot.org/uniprot/O65781 O65781]
 +
** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
 +
** [http://www.uniprot.org/uniprot/P04397 P04397]
 +
** [http://www.uniprot.org/uniprot/P09147 P09147]
 +
** [http://www.uniprot.org/uniprot/P13226 P13226]
 +
** [http://www.uniprot.org/uniprot/P09609 P09609]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=udp-glucose_4-epimerase_5}}
 +
{{#set: common name=udp-glucose_4-epimerase}}
 +
{{#set: ec number=EC-5.1.3.2}}
 +
{{#set: gene associated=Tiso_gene_9823|Tiso_gene_3236|Tiso_gene_15395|Tiso_gene_10797}}
 +
{{#set: in pathway=PWY-7344|PWY-6397|COLANSYN-PWY|PWY-6527|PWY-7328|PWY-6317|PWY66-422|PWY-3821}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:57, 18 March 2018

Reaction UDPGLUCEPIM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • udp-glucose_4-epimerase_5
    • udp-glucose_4-epimerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UDP-α-D-glucose[c] <=> 1 UDP-α-D-galactose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7344, UDP-D-galactose biosynthesis: PWY-7344
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6397, mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: PWY-6397
    • 2 reactions found over 17 reactions in the full pathway
  • COLANSYN-PWY, colanic acid building blocks biosynthesis: COLANSYN-PWY
    • 5 reactions found over 11 reactions in the full pathway
  • PWY-6527, stachyose degradation: PWY-6527
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7328, superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: PWY-7328
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-6317, D-galactose degradation I (Leloir pathway): PWY-6317
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-422, D-galactose degradation V (Leloir pathway): PWY66-422
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-3821, D-galactose degradation III: PWY-3821
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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