Difference between revisions of "L-3-HYDROXYACYL-COA"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...")
(Created page with "Category:Gene == Gene Tiso_gene_12892 == * left end position: ** 3018 * transcription direction: ** POSITIVE * right end position: ** 4800 * centisome position: ** 45.3629...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] ==
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== Gene Tiso_gene_12892 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3018
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
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** POSITIVE
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* right end position:
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** 4800
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* centisome position:
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** 45.362995   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[3.2.1.6-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[COUMARATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[P-COUMAROYL-COA]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 4-coumarate[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 4-coumaroyl-CoA[c]
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* [[3.2.1.73-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[QUINOPRIBOTRANS-RXN]]
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* [[Tiso_gene_12275]]
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** in-silico_annotation
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** [[pantograph]]-[[athaliana]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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* [[Tiso_gene_14183]]
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* [[PWY-5316]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-5653]]
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== Pathways  ==
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* [[PYRIDNUCSYN-PWY]]
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* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
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* [[PWY-7342]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7046]], 4-coumarate degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7046 PWY-7046]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361]
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** '''7''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6320]], phaselate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6320 PWY-6320]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5135]], xanthohumol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6982]], umbelliferone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6982 PWY-6982]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3018}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19641 19641]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=4800}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01616 R01616]
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{{#set: centisome position=45.362995    }}
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* UNIPROT:
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{{#set: reaction associated=3.2.1.6-RXN|3.2.1.73-RXN|QUINOPRIBOTRANS-RXN}}
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** [http://www.uniprot.org/uniprot/P31684 P31684]
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{{#set: pathway associated=PWY-5316|PWY-5653|PYRIDNUCSYN-PWY|PWY-7342}}
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** [http://www.uniprot.org/uniprot/P31685 P31685]
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** [http://www.uniprot.org/uniprot/Q9SWH8 Q9SWH8]
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** [http://www.uniprot.org/uniprot/Q9SWH7 Q9SWH7]
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** [http://www.uniprot.org/uniprot/P17814 P17814]
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** [http://www.uniprot.org/uniprot/P31687 P31687]
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** [http://www.uniprot.org/uniprot/Q8S5C2 Q8S5C2]
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** [http://www.uniprot.org/uniprot/P14912 P14912]
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** [http://www.uniprot.org/uniprot/P14913 P14913]
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** [http://www.uniprot.org/uniprot/P31686 P31686]
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** [http://www.uniprot.org/uniprot/Q42524 Q42524]
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** [http://www.uniprot.org/uniprot/Q42943 Q42943]
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** [http://www.uniprot.org/uniprot/Q42982 Q42982]
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** [http://www.uniprot.org/uniprot/P93360 P93360]
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** [http://www.uniprot.org/uniprot/P93361 P93361]
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** [http://www.uniprot.org/uniprot/O24146 O24146]
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** [http://www.uniprot.org/uniprot/O48868 O48868]
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** [http://www.uniprot.org/uniprot/O48869 O48869]
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** [http://www.uniprot.org/uniprot/O81139 O81139]
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** [http://www.uniprot.org/uniprot/O81140 O81140]
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** [http://www.uniprot.org/uniprot/P41636 P41636]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-6.2.1.12}}
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{{#set: gene associated=Tiso_gene_12275|Tiso_gene_14183}}
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{{#set: in pathway=PWY-6920|PWY-6435|PWY1F-FLAVSYN|PWY-7046|PWY-361|PWY-7397|PWY-6320|PWY-7398|PWY-5754|PWY-5135|PWY-6982}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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Revision as of 18:01, 18 March 2018

Gene Tiso_gene_12892

  • left end position:
    • 3018
  • transcription direction:
    • POSITIVE
  • right end position:
    • 4800
  • centisome position:
    • 45.362995
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=L-3-HYDROXYACYL-COA&oldid=21319"