Difference between revisions of "Tiso gene 8780"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12490 RXN-12490] == * direction: ** LEFT-TO-RIGHT * common name: ** hydroxyacyl-coenzyme_a_dehy...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=URIDINE URIDINE] == * smiles: ** C(O)C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2)) * inchi key: ** InChI...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12490 RXN-12490] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=URIDINE URIDINE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(O)C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2))
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* inchi key:
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** InChIKey=DRTQHJPVMGBUCF-XVFCMESISA-N
 
* common name:
 
* common name:
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** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
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** uridine
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** 3-hydroxyacyl-_dehydrogenase
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* molecular weight:
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** hydroxyacyl-coenzyme_a_mitochondrial
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** 244.204   
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[GTUP]]
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** 1 [[NAD]][c] '''+''' 1 [[CPD0-2244]][c] '''=>''' 1 [[CPD0-2123]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
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* [[AUPT]]
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* With common name(s):
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* [[UTUP]]
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** 1 NAD+[c] '''+''' 1 (S)-3-hydroxydecanoyl-CoA[c] '''=>''' 1 3-oxodecanoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
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* [[URIDINE-NUCLEOSIDASE-RXN]]
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* [[DGTUP]]
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== Genes associated with this reaction  ==
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* [[DUTUP]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[DCTUP]]
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* [[Tiso_gene_5857]]
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* [[DATUP]]
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** IN-SILICO_ANNOTATION
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* [[DTTUP]]
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***EC-NUMBER
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* [[ITUP]]
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** EXPERIMENTAL_ANNOTATION
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* [[URIDINEKIN-RXN]]
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***EC-NUMBER
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== Reaction(s) known to produce the compound ==
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** [[pantograph]]-[[athaliana]]
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* [[CYTIDEAM2-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14025]]
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** [[pantograph]]-[[creinhardtii]]
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* [[UMPP]]
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** [[pantograph]]-[[creinhardtii]]
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== Reaction(s) of unknown directionality ==
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* [[Tiso_gene_14262]]
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* [[URKI-RXN]]
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** IN-SILICO_ANNOTATION
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* [[URPHOS-RXN]]
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18839]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14027]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14026]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18838]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 58-96-8
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31188 31188]
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* METABOLIGHTS : MTBLC16704
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* LIGAND-RXN:
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* DRUGBANK : DB02745
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** [http://www.genome.jp/dbget-bin/www_bget?R04743 R04743]
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6029 6029]
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{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
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* HMDB : HMDB00296
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{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
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* LIGAND-CPD:
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{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00299 C00299]
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{{#set: ec number=EC-1.1.1.35}}
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* CHEMSPIDER:
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{{#set: gene associated=Tiso_gene_5857|Tiso_gene_14262|Tiso_gene_18839|Tiso_gene_14027|Tiso_gene_14026|Tiso_gene_18838}}
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** [http://www.chemspider.com/Chemical-Structure.5807.html 5807]
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{{#set: in pathway=PWY-7094}}
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* CHEBI:
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{{#set: reconstruction category=orthology}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16704 16704]
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{{#set: reconstruction tool=pantograph}}
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* BIGG : uri
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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{{#set: smiles=C(O)C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2))}}
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{{#set: reconstruction category=annotation}}
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{{#set: inchi key=InChIKey=DRTQHJPVMGBUCF-XVFCMESISA-N}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: common name=uridine}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: molecular weight=244.204    }}
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{{#set: consumed by=GTUP|AUPT|UTUP|URIDINE-NUCLEOSIDASE-RXN|DGTUP|DUTUP|DCTUP|DATUP|DTTUP|ITUP|URIDINEKIN-RXN}}
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{{#set: produced by=CYTIDEAM2-RXN|RXN-14025|UMPP}}
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{{#set: reversible reaction associated=URKI-RXN|URPHOS-RXN}}

Revision as of 18:02, 18 March 2018

Metabolite URIDINE

  • smiles:
    • C(O)C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2))
  • inchi key:
    • InChIKey=DRTQHJPVMGBUCF-XVFCMESISA-N
  • common name:
    • uridine
  • molecular weight:
    • 244.204
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 58-96-8
  • METABOLIGHTS : MTBLC16704
  • DRUGBANK : DB02745
  • PUBCHEM:
  • HMDB : HMDB00296
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • BIGG : uri




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