Difference between revisions of "RXN-10915"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.25-RXN 1.2.1.25-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-methyl-2-oxobutanoa...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15830 RXN-15830] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.25-RXN 1.2.1.25-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15830 RXN-15830] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-methyl-2-oxobutanoate_dehydrogenase
+
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.25 EC-1.2.1.25]
+
** [http://enzyme.expasy.org/EC/1.9.3.1 EC-1.9.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ISOBUTYRYL-COA]][c]
+
** 4 [[Cytochromes-C-Reduced]][e] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 8 [[PROTON]][c] '''=>''' 4 [[Cytochromes-C-Oxidized]][e] '''+''' 4 [[PROTON]][e] '''+''' 2 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-methyl-2-oxobutanoate[c] '''+''' 1 coenzyme A[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 CO2[c] '''+''' 1 isobutanoyl-CoA[c]
+
** 4 a reduced c-type cytochrome[e] '''+''' 1 oxygen[c] '''+''' 8 H+[c] '''=>''' 4 an oxidized c-type cytochrome[e] '''+''' 4 H+[e] '''+''' 2 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3260]]
+
* [[Tiso_gene_15682]]
−
** EXPERIMENTAL_ANNOTATION
+
** [[pantograph]]-[[esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
* [[Tiso_gene_18053]]
−
* [[Tiso_gene_11793]]
+
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18580]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_7948]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
+
* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13997 13997]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01210 R01210]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-methyl-2-oxobutanoate_dehydrogenase}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-1.2.1.25}}
+
{{#set: ec number=EC-1.9.3.1}}
−
{{#set: gene associated=Tiso_gene_3260|Tiso_gene_11793}}
+
{{#set: gene associated=Tiso_gene_15682|Tiso_gene_18053|Tiso_gene_18580|Tiso_gene_7948}}
−
{{#set: in pathway=VALDEG-PWY}}
+
{{#set: in pathway=PWY-6692}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 19:05, 18 March 2018

Reaction RXN-15830

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6692, Fe(II) oxidation: PWY-6692
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-10915&oldid=21876"