Difference between revisions of "Tiso gene 3762"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-7238 RXN0-7238] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-7238 RXN0-7238] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** TCA cycle VIII (helicobacter)
+
** polyketide_synthase
 +
** long_chain_acyl-_synthetase
 +
** acyl-_synthetase
 +
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** Krebs cycle
 
−
** tricarboxylic acid cycle
 
−
** TCA cycle
 
−
** citric acid cycle
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''6''' reactions found over '''9''' reactions in the full pathway
+
* With identifiers:
−
* [[ACONITATEDEHYDR-RXN]]
+
** 1 [[PROTON]][e] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-9247]][e] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CPD-18346]][c]
−
* [[ACONITATEHYDR-RXN]]
+
* With common name(s):
−
* [[CITSYN-RXN]]
+
** 1 H+[e] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 cis-vaccenate[e] '''=>''' 1 H+[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 cis-vaccenoyl-CoA[c]
−
* [[FUMHYDR-RXN]]
+
 
−
* [[ISOCITDEH-RXN]]
+
== Genes associated with this reaction  ==
−
* [[RXNI-2]]
+
Genes have been associated with this reaction based on different elements listed below.
−
== Reaction(s) not found ==
+
* [[Tiso_gene_10876]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
+
** IN-SILICO_ANNOTATION
−
* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
+
***EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXNI-3 RXNI-3]
+
* [[Tiso_gene_13394]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_135]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_136]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_348]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_7855]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9394]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4191]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_500]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=TCA cycle VIII (helicobacter)}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: common name=Krebs cycle|tricarboxylic acid cycle|TCA cycle|citric acid cycle}}
+
{{#set: common name=long_chain_acyl-_synthetase}}
−
{{#set: reaction found=6}}
+
{{#set: common name=acyl-_synthetase}}
−
{{#set: reaction not found=9}}
+
{{#set: common name=ORF}}
−
{{#set: completion rate=67.0}}
+
{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_136|Tiso_gene_348|Tiso_gene_7855|Tiso_gene_9394|Tiso_gene_4191|Tiso_gene_500}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 19:07, 18 March 2018

Reaction RXN0-7238

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[e] + 1 ATP[c] + 1 coenzyme A[c] + 1 cis-vaccenate[e] => 1 H+[c] + 1 AMP[c] + 1 diphosphate[c] + 1 cis-vaccenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3762&oldid=22140"