Difference between revisions of "PWY-2161"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-113 RXN-113] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1.14...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 T...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-113 RXN-113] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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* common name:
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** reactive oxygen species degradation
 
* Synonym(s):
 
* Synonym(s):
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** removal of superoxide radicals
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''6''' reactions in the full pathway
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** 1 [[CPD1F-140]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[CPD-236]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
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* [[CATAL-RXN]]
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* With common name(s):
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** 8 associated gene(s):
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** 1 gibberellin A20[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 gibberellin A29[c] '''+''' 1 CO2[c] '''+''' 1 succinate[c]
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*** [[Tiso_gene_11607]]
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*** [[Tiso_gene_4990]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_3006]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_11916]]
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* [[Tiso_gene_3330]]
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*** [[Tiso_gene_19683]]
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** [[pantograph]]-[[athaliana]]
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*** [[Tiso_gene_12499]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_5435]]
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== Pathways  ==
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*** [[Tiso_gene_15923]]
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* [[PWY-102]], gibberellin inactivation I (2β-hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102]
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** 3 reconstruction source(s) associated:
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** '''4''' reactions found over '''11''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[annotation-experimental_annotation]]
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* [[orthology]]:
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*** [[orthology-synechocystis]]
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** [[pantograph]]:
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* [[DETOX1-PWY]]
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*** [[esiliculosus]]
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** 0 associated gene:
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*** [[athaliana]]
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* [[GLUTATHIONE-PEROXIDASE-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_6679]]
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*** [[Tiso_gene_8644]]
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*** [[Tiso_gene_1377]]
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*** [[Tiso_gene_6680]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN-12540]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[SUPEROX-DISMUT-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_3587]]
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*** [[Tiso_gene_15757]]
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*** [[Tiso_gene_12651]]
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*** [[Tiso_gene_20023]]
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*** [[Tiso_gene_12652]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03809 R03809]
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{{#set: taxonomic range=TAX-2157}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: ec number=EC-1.14.11}}
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{{#set: common name=reactive oxygen species degradation}}
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{{#set: gene associated=Tiso_gene_3330}}
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{{#set: common name=removal of superoxide radicals}}
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{{#set: in pathway=PWY-102}}
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{{#set: reaction found=5}}
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{{#set: reconstruction category=orthology}}
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{{#set: total reaction=6}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: completion rate=83.0}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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Revision as of 18:08, 18 March 2018

Pathway DETOX1-PWY-1

  • taxonomic range:
  • common name:
    • reactive oxygen species degradation
  • Synonym(s):
    • removal of superoxide radicals

Reaction(s) found

5 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-2161&oldid=22158"