Difference between revisions of "Tiso gene 2851"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine-dna_gly...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** formamidopyrimidine-dna_glycosylase
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** folate transformations I
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** dna_glycosylase
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** dna-(apurinic_or_apyrimidinic_site)_lyase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''12''' reactions in the full pathway
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** 1 [[Damaged-DNA-Pyrimidine]][c] '''=>''' 1 [[DNA-containing-a-Apyrimidinic-Sites]][c]
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* [[1.5.1.20-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 a damaged DNA pyrimidine[c] '''=>''' 1 an apyrimidinic site in DNA[c]
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*** [[Tiso_gene_14582]]
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*** [[Tiso_gene_16954]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_16492]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_1280]]
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* [[FORMATETHFLIG-RXN]]
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** IN-SILICO_ANNOTATION
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** 2 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_432]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_7582]]
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* [[Tiso_gene_19077]]
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** 4 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[manual-primary_network]]
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* [[Tiso_gene_19078]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***AUTOMATED-NAME-MATCH
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* [[GLYOHMETRANS-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 4 associated gene(s):
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* [[Tiso_gene_16493]]
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*** [[Tiso_gene_16153]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16154]]
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_18652]]
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* [[Tiso_gene_6558]]
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*** [[Tiso_gene_7776]]
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** IN-SILICO_ANNOTATION
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** 4 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_11590]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_14609]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* [[HOMOCYSMETB12-RXN]]
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***EC-NUMBER
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** 1 associated gene(s):
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* [[Tiso_gene_17380]]
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*** [[Tiso_gene_1602]]
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** IN-SILICO_ANNOTATION
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** 4 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[manual-primary_network]]
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***AUTOMATED-NAME-MATCH
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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* [[METHENYLTHFCYCLOHYDRO-RXN]]
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* [[orthology]]:
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** 0 associated gene:
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** [[pantograph]]:
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** 1 reconstruction source(s) associated:
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*** [[esiliculosus]]
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*** [[manual-primary_network]]
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* [[annotation]]:
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* [[METHYLENETHFDEHYDROG-NADP-RXN]]
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** [[pathwaytools]]:
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** 2 associated gene(s):
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*** [[experimental_annotation]]
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*** [[Tiso_gene_432]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_6004]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-5061]]
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** 1 associated gene(s):
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*** [[Tiso_gene_4806]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.15-RXN 1.5.1.15-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.19-RXN 2.1.1.19-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=5-FORMYL-THF-CYCLO-LIGASE-RXN 5-FORMYL-THF-CYCLO-LIGASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMYLTHFDEFORMYL-RXN FORMYLTHFDEFORMYL-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GCVMULTI-RXN GCVMULTI-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: common name=formamidopyrimidine-dna_glycosylase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=dna_glycosylase}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
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{{#set: common name=folate transformations I}}
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{{#set: ec number=EC-4.2.99.18}}
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{{#set: reaction found=7}}
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{{#set: gene associated=Tiso_gene_16492|Tiso_gene_1280|Tiso_gene_19077|Tiso_gene_19078|Tiso_gene_16493|Tiso_gene_6558|Tiso_gene_11590|Tiso_gene_14609|Tiso_gene_17380}}
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{{#set: total reaction=12}}
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{{#set: in pathway=}}
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{{#set: completion rate=58.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 19:09, 18 March 2018

Pathway PWY-2201

Reaction(s) found

7 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2851&oldid=22280"