Difference between revisions of "Tiso gene 4479"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11637 RXN-11637] == * direction: ** LEFT-TO-RIGHT * common name: ** ribosomal_rna_small_subunit...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11637 RXN-11637] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ribosomal_rna_small_subunit_methyltransferase_i
+
** polyketide_synthase
 +
** long_chain_acyl-_synthetase
 +
** acyl-_synthetase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.198 EC-2.1.1.198]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[16S-rRNA-cytidine1402]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[16S-rRNA-2-O-methylcytidine1402]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[16-HYDROXYPALMITATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CPD-17621]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 S-adenosyl-L-methionine[c] '''+''' 1 a cytidine1402 in 16S rRNA[c] '''=>''' 1 H+[c] '''+''' 1 a 2'-O-methylcytidine1402 in 16S rRNA[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
+
** 1 coenzyme A[c] '''+''' 1 16-hydroxypalmitate[c] '''+''' 1 ATP[c] '''=>''' 1 16-hydroxypalmitoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13501]]
+
* [[Tiso_gene_9394]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4191]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_500]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_136]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_7855]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_135]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_348]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10876]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13394]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-321]], cutin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-321 PWY-321]
 +
** '''3''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ribosomal_rna_small_subunit_methyltransferase_i}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: ec number=EC-2.1.1.198}}
+
{{#set: common name=long_chain_acyl-_synthetase}}
−
{{#set: gene associated=Tiso_gene_13501}}
+
{{#set: common name=acyl-_synthetase}}
−
{{#set: in pathway=}}
+
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: gene associated=Tiso_gene_9394|Tiso_gene_4191|Tiso_gene_500|Tiso_gene_136|Tiso_gene_7855|Tiso_gene_135|Tiso_gene_348|Tiso_gene_10876|Tiso_gene_13394}}
 +
{{#set: in pathway=PWY-321|PWY-6733|PWY-1121}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Revision as of 19:09, 18 March 2018

Reaction RXN-16389

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 16-hydroxypalmitate[c] + 1 ATP[c] => 1 16-hydroxypalmitoyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-321, cutin biosynthesis: PWY-321
    • 3 reactions found over 16 reactions in the full pathway
  • PWY-6733, sporopollenin precursors biosynthesis: PWY-6733
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 9 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4479&oldid=22323"