Difference between revisions of "RXN-18200"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxid...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 T...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
 
* common name:
 
* common name:
−
** coproporphyrinogen-iii_oxidase
+
** glycine betaine degradation II (mammalian)
−
** coproporphyrinogen_iii_oxidase_chloroplast
+
−
** coproporphyrinogen_oxidase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''4''' reactions in the full pathway
−
** 2 [[PROTON]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
+
* [[GLYOHMETRANS-RXN]]
−
* With common name(s):
+
** 4 associated gene(s):
−
** 2 H+[c] '''+''' 1 coproporphyrinogen III[c] '''+''' 1 oxygen[c] '''=>''' 1 protoporphyrinogen IX[c] '''+''' 2 H2O[c] '''+''' 2 CO2[c]
+
*** [[Tiso_gene_16153]]
−
 
+
*** [[Tiso_gene_16154]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_18652]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_7776]]
−
* [[Tiso_gene_2246]]
+
** 4 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** [[manual-primary_network]]
−
** EXPERIMENTAL_ANNOTATION
+
*** [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** [[orthology-esiliculosus]]
−
* [[Tiso_gene_2247]]
+
* [[RXN66-576]]
−
** IN-SILICO_ANNOTATION
+
** 1 associated gene(s):
−
***EC-NUMBER
+
*** [[Tiso_gene_2717]]
−
** [[pantograph]]-[[athaliana]]
+
** 1 reconstruction source(s) associated:
−
** [[pantograph]]-[[synechocystis]]
+
*** [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[RXN66-577]]
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 associated gene(s):
−
* [[Tiso_gene_3671]]
+
*** [[Tiso_gene_14788]]
−
** IN-SILICO_ANNOTATION
+
** 1 reconstruction source(s) associated:
−
***EC-NUMBER
+
*** [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
== Reaction(s) not found ==
−
* [[Tiso_gene_13365]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.5-RXN 2.1.1.5-RXN]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13364]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
+
−
*** [[synechocystis]]
+
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-40674}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
+
{{#set: common name=glycine betaine degradation II (mammalian)}}
−
* LIGAND-RXN:
+
{{#set: reaction found=3}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
+
{{#set: total reaction=4}}
−
* UNIPROT:
+
{{#set: completion rate=75.0}}
−
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
+
−
** [http://www.uniprot.org/uniprot/P36552 P36552]
+
−
** [http://www.uniprot.org/uniprot/O25376 O25376]
+
−
** [http://www.uniprot.org/uniprot/P36553 P36553]
+
−
** [http://www.uniprot.org/uniprot/P33771 P33771]
+
−
** [http://www.uniprot.org/uniprot/P43899 P43899]
+
−
** [http://www.uniprot.org/uniprot/O25824 O25824]
+
−
** [http://www.uniprot.org/uniprot/P54304 P54304]
+
−
** [http://www.uniprot.org/uniprot/P11353 P11353]
+
−
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
+
−
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
+
−
** [http://www.uniprot.org/uniprot/P36551 P36551]
+
−
** [http://www.uniprot.org/uniprot/P35055 P35055]
+
−
** [http://www.uniprot.org/uniprot/P43898 P43898]
+
−
** [http://www.uniprot.org/uniprot/P72848 P72848]
+
−
** [http://www.uniprot.org/uniprot/P73245 P73245]
+
−
** [http://www.uniprot.org/uniprot/P74132 P74132]
+
−
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
+
−
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
+
−
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
+
−
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
+
−
** [http://www.uniprot.org/uniprot/P95651 P95651]
+
−
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=coproporphyrinogen-iii_oxidase}}
+
−
{{#set: common name=coproporphyrinogen_iii_oxidase_chloroplast}}
+
−
{{#set: common name=coproporphyrinogen_oxidase}}
+
−
{{#set: ec number=EC-1.3.3.3}}
+
−
{{#set: gene associated=Tiso_gene_2246|Tiso_gene_2247|Tiso_gene_3671|Tiso_gene_13365|Tiso_gene_13364}}
+
−
{{#set: in pathway=PWY0-1415|PWY-7159|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:12, 18 March 2018

Pathway PWY-3661-1

  • taxonomic range:
  • common name:
    • glycine betaine degradation II (mammalian)
  • Synonym(s):

Reaction(s) found

3 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-18200&oldid=22685"