Difference between revisions of "RXN-18200"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxid...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 T...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
 
* common name:
 
* common name:
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** coproporphyrinogen-iii_oxidase
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** glycine betaine degradation II (mammalian)
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** coproporphyrinogen_iii_oxidase_chloroplast
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** coproporphyrinogen_oxidase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''4''' reactions in the full pathway
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** 2 [[PROTON]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
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* [[GLYOHMETRANS-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 2 H+[c] '''+''' 1 coproporphyrinogen III[c] '''+''' 1 oxygen[c] '''=>''' 1 protoporphyrinogen IX[c] '''+''' 2 H2O[c] '''+''' 2 CO2[c]
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*** [[Tiso_gene_16153]]
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*** [[Tiso_gene_16154]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_18652]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_7776]]
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* [[Tiso_gene_2246]]
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** 4 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[manual-primary_network]]
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_2247]]
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* [[RXN66-576]]
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** IN-SILICO_ANNOTATION
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** 1 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_2717]]
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** [[pantograph]]-[[athaliana]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN66-577]]
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** [[pantograph]]-[[creinhardtii]]
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** 1 associated gene(s):
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* [[Tiso_gene_3671]]
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*** [[Tiso_gene_14788]]
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** IN-SILICO_ANNOTATION
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** 1 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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== Reaction(s) not found ==
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* [[Tiso_gene_13365]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.5-RXN 2.1.1.5-RXN]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13364]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-40674}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
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{{#set: common name=glycine betaine degradation II (mammalian)}}
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* LIGAND-RXN:
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{{#set: reaction found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
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{{#set: total reaction=4}}
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* UNIPROT:
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{{#set: completion rate=75.0}}
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** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
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** [http://www.uniprot.org/uniprot/P36552 P36552]
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** [http://www.uniprot.org/uniprot/O25376 O25376]
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** [http://www.uniprot.org/uniprot/P36553 P36553]
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** [http://www.uniprot.org/uniprot/P33771 P33771]
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** [http://www.uniprot.org/uniprot/P43899 P43899]
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** [http://www.uniprot.org/uniprot/O25824 O25824]
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** [http://www.uniprot.org/uniprot/P54304 P54304]
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** [http://www.uniprot.org/uniprot/P11353 P11353]
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** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
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** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
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** [http://www.uniprot.org/uniprot/P36551 P36551]
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** [http://www.uniprot.org/uniprot/P35055 P35055]
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** [http://www.uniprot.org/uniprot/P43898 P43898]
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** [http://www.uniprot.org/uniprot/P72848 P72848]
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** [http://www.uniprot.org/uniprot/P73245 P73245]
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** [http://www.uniprot.org/uniprot/P74132 P74132]
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** [http://www.uniprot.org/uniprot/Q51676 Q51676]
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** [http://www.uniprot.org/uniprot/Q42946 Q42946]
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** [http://www.uniprot.org/uniprot/Q42840 Q42840]
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** [http://www.uniprot.org/uniprot/Q39581 Q39581]
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** [http://www.uniprot.org/uniprot/P95651 P95651]
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** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=coproporphyrinogen-iii_oxidase}}
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{{#set: common name=coproporphyrinogen_iii_oxidase_chloroplast}}
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{{#set: common name=coproporphyrinogen_oxidase}}
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{{#set: ec number=EC-1.3.3.3}}
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{{#set: gene associated=Tiso_gene_2246|Tiso_gene_2247|Tiso_gene_3671|Tiso_gene_13365|Tiso_gene_13364}}
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{{#set: in pathway=PWY0-1415|PWY-7159|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 19:12, 18 March 2018

Pathway PWY-3661-1

  • taxonomic range:
  • common name:
    • glycine betaine degradation II (mammalian)
  • Synonym(s):

Reaction(s) found

3 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-18200&oldid=22685"