Difference between revisions of "LysW-L-glutamate"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** trna_intron_ca...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
 
* common name:
 
* common name:
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** ORF
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** L-lysine degradation II (L-pipecolate pathway)
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** trna_intron_catalytic_cterminal_subfamily_protein
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* ec number:
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** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''8''' reactions in the full pathway
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** 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c]
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* [[2-AMINOADIPATE-AMINOTRANSFERASE-RXN]]
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* With common name(s):
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** 0 associated gene:
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** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a 3'-half-tRNA molecule with a 5'-OH end[c] '''+''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c] '''+''' 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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* [[2-KETO-ADIPATE-DEHYDROG-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 associated gene(s):
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* [[Tiso_gene_10338]]
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*** [[Tiso_gene_10209]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_9330]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_3776]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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* [[RXN-10855]]
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* [[Tiso_gene_5254]]
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** 5 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16719]]
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***EC-NUMBER
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*** [[Tiso_gene_5424]]
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== Pathways  ==
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*** [[Tiso_gene_6563]]
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* [[PWY-6689]], tRNA splicing I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
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*** [[Tiso_gene_6562]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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*** [[Tiso_gene_5425]]
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* [[PWY-7803]], tRNA splicing II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7803 PWY-7803]
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** 1 reconstruction source(s) associated:
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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== Reaction(s) not found ==
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* [[annotation]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=L-PIPECOLATE-OXIDASE-RXN L-PIPECOLATE-OXIDASE-RXN]
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** [[pathwaytools]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16267 RXN-16267]
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*** [[in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8166 RXN-8166]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8172 RXN-8172]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-565 RXN66-565]
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: taxonomic range=TAX-40674}}
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** [http://www.uniprot.org/uniprot/O07118 O07118]
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{{#set: common name=L-lysine degradation II (L-pipecolate pathway)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=3}}
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{{#set: common name=ORF}}
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{{#set: total reaction=8}}
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{{#set: common name=trna_intron_catalytic_cterminal_subfamily_protein}}
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{{#set: completion rate=38.0}}
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{{#set: ec number=EC-4.6.1.16}}
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{{#set: gene associated=Tiso_gene_10338|Tiso_gene_3776|Tiso_gene_5254}}
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{{#set: in pathway=PWY-6689|PWY-7803}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 18:13, 18 March 2018

Pathway PWY66-425

  • taxonomic range:
  • common name:
    • L-lysine degradation II (L-pipecolate pathway)
  • Synonym(s):

Reaction(s) found

3 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=LysW-L-glutamate&oldid=22837"