Difference between revisions of "RXN0-1132"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
(Created page with "Category:Gene == Gene Tiso_gene_6569 == * left end position: ** 6973 * transcription direction: ** POSITIVE * right end position: ** 10122 * centisome position: ** 57.8912...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] ==
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== Gene Tiso_gene_6569 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 6973
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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** 3-oxoacyl-synthase
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* right end position:
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* ec number:
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** 10122
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** 57.891243   
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* Synonym(s):
 
* Synonym(s):
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** β-ketoacyl-ACP synthase I
 
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** β-ketoacyl-acyl carrier protein synthetase
 
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** β-ketoacyl-[acyl carrier protein] synthase
 
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** condensing enzyme
 
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** β-ketoacyl acyl carrier protein synthase
 
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** 3-oxoacyl-[acyl-carrier-protein] synthase
 
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** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[5.99.1.2-RXN]]
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** 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[MALONYL-ACP]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** in-silico_annotation
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* With common name(s):
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***automated-name-match
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** 1 a dodecanoyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 a malonyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 a 3-oxo-myristoyl-[acp][c] '''+''' 1 CO2[c]
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** experimental_annotation
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[5.99.1.3-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_135]]
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***ec-number
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** IN-SILICO_ANNOTATION
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** experimental_annotation
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***EC-NUMBER
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***ec-number
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* [[Tiso_gene_14485]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15991]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19302]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_5939]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=6973}}
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{{#set: common name=polyketide_synthase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: right end position=10122}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: centisome position=57.891243    }}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: reaction associated=5.99.1.2-RXN|5.99.1.3-RXN}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: common name=β-ketoacyl-ACP synthase I|β-ketoacyl-acyl carrier protein synthetase|β-ketoacyl-[acyl carrier protein] synthase|condensing enzyme|β-ketoacyl acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)}}
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_14485|Tiso_gene_13394|Tiso_gene_15991|Tiso_gene_19302|Tiso_gene_5939|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_500}}
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{{#set: in pathway=PWY-5971}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:17, 18 March 2018

Gene Tiso_gene_6569

  • left end position:
    • 6973
  • transcription direction:
    • POSITIVE
  • right end position:
    • 10122
  • centisome position:
    • 57.891243
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-1132&oldid=23201"