Difference between revisions of "Tiso gene 11901"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9674 RXN-9674] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like_chlorop...")
(Created page with "Category:Gene == Gene Tiso_gene_8508 == * left end position: ** 7229 * transcription direction: ** NEGATIVE * right end position: ** 9564 * centisome position: ** 70.9839...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9674 RXN-9674] ==
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== Gene Tiso_gene_8508 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 7229
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* common name:
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* transcription direction:
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** beta-glucosidase-like_chloroplastic
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** NEGATIVE
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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* right end position:
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** ORF
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** 9564
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** beta_glucosidase
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* centisome position:
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* ec number:
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** 70.9839   
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[GSHTRAN-RXN]]
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** 1 [[CPD-10277]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[CPD-12699]][c]
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** in-silico_annotation
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* With common name(s):
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***automated-name-match
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** 1 lotaustralin[c] '''+''' 1 H2O[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 (2R)-2-hydroxy-2-methylbutanenitrile[c]
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* [[GST-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-13673]]
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* [[Tiso_gene_6497]]
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** in-silico_annotation
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** [[pantograph]]-[[esiliculosus]]
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***automated-name-match
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* [[Tiso_gene_2344]]
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* [[RXN-15680]]
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** [[pantograph]]-[[esiliculosus]]
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** in-silico_annotation
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* [[Tiso_gene_10001]]
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***automated-name-match
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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* [[Tiso_gene_13305]]
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* [[PWY-7112]]
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** IN-SILICO_ANNOTATION
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* [[PWY-6842]]
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***EC-NUMBER
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* [[PWY-4061]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-7533]]
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***EC-NUMBER
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* [[Tiso_gene_6188]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15067]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3467]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6187]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13306]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2843]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15066]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_8669]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6007]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5836]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-6002]], lotaustralin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6002 PWY-6002]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7092]], neolinustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7092 PWY-7092]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=7229}}
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: right end position=9564}}
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{{#set: common name=ORF}}
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{{#set: centisome position=70.9839    }}
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{{#set: common name=beta_glucosidase}}
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{{#set: reaction associated=GSHTRAN-RXN|GST-RXN|RXN-13673|RXN-15680}}
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{{#set: ec number=EC-3.2.1.21}}
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{{#set: pathway associated=PWY-7112|PWY-6842|PWY-4061|PWY-7533}}
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{{#set: gene associated=Tiso_gene_6497|Tiso_gene_2344|Tiso_gene_10001|Tiso_gene_13305|Tiso_gene_6188|Tiso_gene_15067|Tiso_gene_3467|Tiso_gene_6187|Tiso_gene_13306|Tiso_gene_2843|Tiso_gene_15066|Tiso_gene_8669|Tiso_gene_6007|Tiso_gene_5836}}
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{{#set: in pathway=PWY-6002|PWY-7092}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:19, 18 March 2018

Gene Tiso_gene_8508

  • left end position:
    • 7229
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 9564
  • centisome position:
    • 70.9839
  • Synonym(s):

Reactions associated

  • GSHTRAN-RXN
    • in-silico_annotation
      • automated-name-match
  • GST-RXN
    • in-silico_annotation
      • automated-name-match
  • RXN-13673
    • in-silico_annotation
      • automated-name-match
  • RXN-15680
    • in-silico_annotation
      • automated-name-match

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11901&oldid=23457"