Difference between revisions of "PWY-7180"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** thiamine_mon...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2562 RXN-2562] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2562 RXN-2562] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** ORF
 
−
** thiamine_monophosphate_synthase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3]
+
** [http://enzyme.expasy.org/EC/2.1.1.95 EC-2.1.1.95]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[THIAMINE-P]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[DELTA-TOCOPHEROL]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[BETA-TOCOPHEROL]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 4-methyl-5-(2-phosphooxyethyl)thiazole[c] '''=>''' 1 thiamine phosphate[c] '''+''' 1 diphosphate[c]
+
** 1 δ-tocopherol[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 β-tocopherol[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10320]]
+
* [[Tiso_gene_6738]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2159]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2160]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
−
** [[pantograph]]-[[esiliculosus]]
+
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6897]], thiamine salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6897 PWY-6897]
+
* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
+
 
** '''5''' reactions found over '''7''' reactions in the full pathway
 
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6908 PWY-6908]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[athaliana]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
** Source: [[orthology-creinhardtii]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-synechocystis]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22328 22328]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07504 R07504]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P41835 P41835]
+
−
** [http://www.uniprot.org/uniprot/P71350 P71350]
+
−
** [http://www.uniprot.org/uniprot/O25514 O25514]
+
−
** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
+
−
** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
+
−
** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
+
−
** [http://www.uniprot.org/uniprot/P30137 P30137]
+
−
** [http://www.uniprot.org/uniprot/P39594 P39594]
+
−
** [http://www.uniprot.org/uniprot/P40386 P40386]
+
−
** [http://www.uniprot.org/uniprot/P72965 P72965]
+
−
** [http://www.uniprot.org/uniprot/O48881 O48881]
+
−
** [http://www.uniprot.org/uniprot/O34294 O34294]
+
−
** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.1.1.95}}
−
{{#set: common name=thiamine_monophosphate_synthase}}
+
{{#set: gene associated=Tiso_gene_6738}}
−
{{#set: ec number=EC-2.5.1.3}}
+
{{#set: in pathway=PWY-1422}}
−
{{#set: gene associated=Tiso_gene_10320|Tiso_gene_2159|Tiso_gene_2160}}
+
−
{{#set: in pathway=PWY-6897|PWY-7356|PWY-6908|PWY-7357}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=athaliana|esiliculosus}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=in-silico_annotation}}
 

Revision as of 19:22, 18 March 2018

Reaction RXN-2562

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1422, vitamin E biosynthesis (tocopherols): PWY-1422
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7180&oldid=23795"