Difference between revisions of "PWY-5697"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11520 RXN-11520] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11520 RXN-11520] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 +
* common name:
 +
** glycolysis II (from fructose 6-phosphate)
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''11''' reactions found over '''11''' reactions in the full pathway
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** 1 [[1-7-DIMETHYLXANTHINE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-12483]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 paraxanthine[c] '''+''' 1 H2O[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 1,7-dimethylurate[c]
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*** [[Tiso_gene_14718]]
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*** [[Tiso_gene_8720]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_11775]]
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** 7 reconstruction source(s) associated:
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** [[pantograph]]-[[athaliana]]
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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* [[PWY-6632]], caffeine degradation IV (bacteria, via demethylation and oxidation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6632 PWY-6632]
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*** [[annotation-in-silico_annotation]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-athaliana]]
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== Reconstruction information  ==
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*** [[orthology-synechocystis]]
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* [[orthology]]:
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*** [[manual-primary_network]]
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** [[pantograph]]:
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*** [[orthology-creinhardtii]]
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*** [[athaliana]]
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* [[3PGAREARR-RXN]]
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** 16 associated gene(s):
 +
*** [[Tiso_gene_2667]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_15048]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_7201]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[6PFRUCTPHOS-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_5733]]
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*** [[Tiso_gene_596]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_65]]
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*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
 +
* [[F16BDEPHOS-RXN]]
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** 7 associated gene(s):
 +
*** [[Tiso_gene_16502]]
 +
*** [[Tiso_gene_8226]]
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*** [[Tiso_gene_9435]]
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*** [[Tiso_gene_4904]]
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*** [[Tiso_gene_3483]]
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*** [[Tiso_gene_15398]]
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*** [[Tiso_gene_4905]]
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** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_6766]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_235]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PEPSYNTH-RXN]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_14642]]
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*** [[Tiso_gene_18264]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[RXN-15513]]
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** 8 associated gene(s):
 +
*** [[Tiso_gene_7201]]
 +
*** [[Tiso_gene_9922]]
 +
*** [[Tiso_gene_2841]]
 +
*** [[Tiso_gene_14530]]
 +
*** [[Tiso_gene_9923]]
 +
*** [[Tiso_gene_16271]]
 +
*** [[Tiso_gene_2365]]
 +
*** [[Tiso_gene_14664]]
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_20000]]
 +
*** [[Tiso_gene_19961]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_19962]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
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* ECOCYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R07977 R07977]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5484 PWY-5484]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: gene associated=Tiso_gene_11775}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: in pathway=PWY-6632}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=glycolysis II (from fructose 6-phosphate)}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reaction found=11}}
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{{#set: reconstruction source=athaliana}}
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{{#set: total reaction=11}}
 +
{{#set: completion rate=100.0}}

Revision as of 18:24, 18 March 2018

Pathway PWY-5484

  • taxonomic range:
  • common name:
    • glycolysis II (from fructose 6-phosphate)
  • Synonym(s):

Reaction(s) found

11 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5697&oldid=24152"