Difference between revisions of "PWY-6131"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoglycolate_phosphatase_2...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_CPD-315 ExchangeSeed_CPD-315] == * direction: ** REVERSIBLE * Synonym(s): == Reaction...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_CPD-315 ExchangeSeed_CPD-315] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
+
** REVERSIBLE
* common name:
+
** phosphoglycolate_phosphatase_2
+
** phosphoglycolate_phosphatase
+
** solute_carrier_family_38
+
* ec number:
+
** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[WATER]][c] '''+''' 1 [[CPD-67]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GLYCOLLATE]][c]
+
** 1.0 [[CPD-315]][C-BOUNDARY] '''<=>''' 1.0 [[CPD-315]][e]
 
* With common name(s):
 
* With common name(s):
** 1 H2O[c] '''+''' 1 2-phosphoglycolate[c] '''=>''' 1 phosphate[c] '''+''' 1 glycolate[c]
+
** 1.0 cyanocob(III)alamin[C-BOUNDARY] '''<=>''' 1.0 cyanocob(III)alamin[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[Tiso_gene_18053]]
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
* [[Tiso_gene_18052]]
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
* [[Tiso_gene_15498]]
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
* [[Tiso_gene_8723]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_18054]]
 
** [[pantograph]]-[[creinhardtii]]
 
** [[pantograph]]-[[creinhardtii]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
 
** '''5''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[manual]]
** [[pantograph]]:
+
** Source: [[manual-import_from_medium]]
*** [[creinhardtii]]
+
*** Comment: [[added to manage seeds from boundary to extracellular compartment]]
* [[annotation]]:
+
** [[pathwaytools]]:
+
*** [[experimental_annotation]]
+
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: direction=REVERSIBLE}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
+
{{#set: in pathway=}}
* LIGAND-RXN:
+
{{#set: reconstruction category=manual}}
** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
+
{{#set: reconstruction source=manual-import_from_medium}}
* UNIPROT:
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
** [http://www.uniprot.org/uniprot/P40852 P40852]
+
** [http://www.uniprot.org/uniprot/P40853 P40853]
+
** [http://www.uniprot.org/uniprot/P32662 P32662]
+
** [http://www.uniprot.org/uniprot/P73525 P73525]
+
** [http://www.uniprot.org/uniprot/O33512 O33512]
+
** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
+
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=phosphoglycolate_phosphatase_2}}
+
{{#set: common name=phosphoglycolate_phosphatase}}
+
{{#set: common name=solute_carrier_family_38}}
+
{{#set: ec number=EC-3.1.3.18}}
+
{{#set: gene associated=Tiso_gene_18053|Tiso_gene_18052|Tiso_gene_15498|Tiso_gene_8723|Tiso_gene_18054}}
+
{{#set: in pathway=PWY-181}}
+
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=creinhardtii}}
+
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:24, 18 March 2018

Reaction ExchangeSeed_CPD-315

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 cyanocob(III)alamin[C-BOUNDARY] <=> 1.0 cyanocob(III)alamin[e]

Genes associated with this reaction

Pathways

Reconstruction information

External links