Difference between revisions of "RXN1G-72"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE CHOLINE] == * smiles: ** C(CO)[N+](C)(C)C * inchi key: ** InChIKey=OEYIOHPDSNJKLS-UHFFF...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** structural_maintenan...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE CHOLINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
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* smiles:
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* direction:
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** C(CO)[N+](C)(C)C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=OEYIOHPDSNJKLS-UHFFFAOYSA-N
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* common name:
 
* common name:
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** choline
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** ORF
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* molecular weight:
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** structural_maintenance_of_chromosomes_protein_6
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** 104.172   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
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** (2-hydroxyethyl)trimethylammonium
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN0-7230]]
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* With identifiers:
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* [[2.3.1.91-RXN]]
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** 1 [[tRNA-Sec]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[AMP]][c]
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* [[2.7.8.24-RXN]]
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* With common name(s):
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* [[CHOLINE-KINASE-RXN]]
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** 1 a tRNAsec[c] '''+''' 1 ATP[c] '''+''' 1 L-serine[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 AMP[c]
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== Reaction(s) known to produce the compound ==
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* [[RXN-17758]]
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== Genes associated with this reaction  ==
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* [[ACETYLCHOLINESTERASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) of unknown directionality ==
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* [[Tiso_gene_587]]
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* [[CHD-RXN]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1684]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10015]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_1682]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 62-49-7
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* LIGAND-RXN:
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* CAS : 123-41-1
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** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
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* Wikipedia : Choline
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{{#set: direction=LEFT-TO-RIGHT}}
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* METABOLIGHTS : MTBLC15354
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{{#set: common name=ORF}}
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* DRUGBANK : DB00122
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{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
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* PUBCHEM:
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{{#set: ec number=EC-6.1.1.11}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=305 305]
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{{#set: gene associated=Tiso_gene_587|Tiso_gene_1684|Tiso_gene_10015|Tiso_gene_1682}}
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* HMDB : HMDB00097
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{{#set: in pathway=PWY0-901|PWY-6281}}
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* LIGAND-CPD:
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{{#set: reconstruction category=orthology|annotation}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00114 C00114]
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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* CHEMSPIDER:
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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** [http://www.chemspider.com/Chemical-Structure.299.html 299]
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* CHEBI:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15354 15354]
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* BIGG : chol
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{{#set: smiles=C(CO)[N+](C)(C)C}}
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{{#set: inchi key=InChIKey=OEYIOHPDSNJKLS-UHFFFAOYSA-N}}
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{{#set: common name=choline}}
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{{#set: molecular weight=104.172    }}
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{{#set: common name=(2-hydroxyethyl)trimethylammonium}}
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{{#set: consumed by=RXN0-7230|2.3.1.91-RXN|2.7.8.24-RXN|CHOLINE-KINASE-RXN}}
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{{#set: produced by=RXN-17758|ACETYLCHOLINESTERASE-RXN}}
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{{#set: consumed or produced by=CHD-RXN}}
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Revision as of 18:25, 18 March 2018

Reaction RXN0-2161

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • structural_maintenance_of_chromosomes_protein_6
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAsec[c] + 1 ATP[c] + 1 L-serine[c] => 1 diphosphate[c] + 1 an L-seryl-[tRNAsec][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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