Difference between revisions of "PWY-5661"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] == * direction: ** LEFT-TO-R...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** delta-1-pyrroline-5-...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
+
** ORF
−
** propionyl-_carboxylase_alpha_chain
+
** delta-1-pyrroline-5-carboxylate_synthase
 +
** delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.4.1.4 EC-6.4.1.4]
+
** [http://enzyme.expasy.org/EC/1.2.1.88 EC-1.2.1.88]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HCO3]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[3-METHYL-CROTONYL-COA]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 hydrogencarbonate[c] '''+''' 1 ATP[c] '''+''' 1 3-methylcrotonyl-CoA[c] '''=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 3-methylglutaconyl-CoA[c]
+
** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''=>''' 1 L-glutamate[c] '''+''' 1 NADH[c] '''+''' 2 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14499]]
+
* [[Tiso_gene_18337]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* [[Tiso_gene_18338]]
−
** [[pantograph]]-[[creinhardtii]]
+
** IN-SILICO_ANNOTATION
−
* [[Tiso_gene_5029]]
+
***EC-NUMBER
 +
* [[Tiso_gene_886]]
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_9680]]
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_6952]]
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_16634]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
* [[Tiso_gene_3513]]
−
* [[Tiso_gene_10675]]
+
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_7381]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
+
* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6853]], ethylene biosynthesis II (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6853 PWY-6853]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-synechocystis]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
−
* [[annotation]]:
+
** Source: [[annotation-experimental_annotation]]
−
** [[pathwaytools]]:
+
*** Tool: [[pathwaytools]]
−
*** [[experimental_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13589 13589]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q40121 Q40121]
+
−
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial}}
+
{{#set: common name=ORF}}
−
{{#set: common name=propionyl-_carboxylase_alpha_chain}}
+
{{#set: common name=delta-1-pyrroline-5-carboxylate_synthase}}
−
{{#set: ec number=EC-6.4.1.4}}
+
{{#set: common name=delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial}}
−
{{#set: gene associated=Tiso_gene_14499|Tiso_gene_5029|Tiso_gene_10675}}
+
{{#set: ec number=EC-1.2.1.88}}
−
{{#set: in pathway=LEU-DEG2-PWY}}
+
{{#set: gene associated=Tiso_gene_18337|Tiso_gene_18338|Tiso_gene_886|Tiso_gene_9680|Tiso_gene_6952|Tiso_gene_16634|Tiso_gene_3513|Tiso_gene_7381}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PROUT-PWY|ARGASEDEG-PWY|PWY-6853}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=creinhardtii|athaliana}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-synechocystis}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 19:28, 18 March 2018

Reaction RXN-14116

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • delta-1-pyrroline-5-carboxylate_synthase
    • delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PROUT-PWY, L-proline degradation: PROUT-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway): ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6853, ethylene biosynthesis II (microbes): PWY-6853
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5661&oldid=24587"