Difference between revisions of "TransportSeed Light"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYMETVALDEHYDRAT-RXN DIHYDROXYMETVALDEHYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYMETVALDEHYDRAT-RXN DIHYDROXYMETVALDEHYDRAT-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183939 TAX-183939]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925]
+
 
* common name:
 
* common name:
−
** incomplete reductive TCA cycle
+
** 2,3-Dihydroxy-3-methylvalerate dehydratase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.2.1.9 EC-4.2.1.9]
 
* Synonym(s):
 
* Synonym(s):
−
** citric acid cycle variant
 
−
** tricarboxylic acid cycle variant
 
−
** TCA cycle variation I
 
−
** incomplete reductive tricarboxylic acid cycle
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''4''' reactions found over '''7''' reactions in the full pathway
+
* With identifiers:
−
* [[FUMHYDR-RXN]]
+
** 1 [[1-KETO-2-METHYLVALERATE]][c] '''=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[WATER]][c]
−
* [[MALATE-DEH-RXN]]
+
* With common name(s):
−
* [[PYRUVATE-CARBOXYLASE-RXN]]
+
** 1 (R)-2,3-dihydroxy-3-methylpentanoate[c] '''=>''' 1 (S)-3-methyl-2-oxopentanoate[c] '''+''' 1 H2O[c]
−
* [[SUCCCOASYN-RXN]]
+
 
−
== Reaction(s) not found ==
+
== Genes associated with this reaction  ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
+
* [[Tiso_gene_1563]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
+
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
== Pathways  ==
 +
* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5104]], L-isoleucine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-224756}}
+
* RHEA:
−
{{#set: taxonomic range=TAX-183939}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27694 27694]
−
{{#set: taxonomic range=TAX-183925}}
+
* LIGAND-RXN:
−
{{#set: common name=incomplete reductive TCA cycle}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R05070 R05070]
−
{{#set: common name=citric acid cycle variant|tricarboxylic acid cycle variant|TCA cycle variation I|incomplete reductive tricarboxylic acid cycle}}
+
* UNIPROT:
−
{{#set: reaction found=4}}
+
** [http://www.uniprot.org/uniprot/P55186 P55186]
−
{{#set: reaction not found=7}}
+
** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
−
{{#set: completion rate=57.0}}
+
** [http://www.uniprot.org/uniprot/P05791 P05791]
 +
** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
 +
** [http://www.uniprot.org/uniprot/P44851 P44851]
 +
** [http://www.uniprot.org/uniprot/Q02139 Q02139]
 +
** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
 +
** [http://www.uniprot.org/uniprot/P39522 P39522]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=2,3-Dihydroxy-3-methylvalerate dehydratase}}
 +
{{#set: ec number=EC-4.2.1.9}}
 +
{{#set: gene associated=Tiso_gene_1563}}
 +
{{#set: in pathway=PWY-5103|ILEUSYN-PWY|PWY-5101|PWY-5104}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:29, 18 March 2018

Reaction DIHYDROXYMETVALDEHYDRAT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2,3-Dihydroxy-3-methylvalerate dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5103, L-isoleucine biosynthesis III: PWY-5103
    • 4 reactions found over 7 reactions in the full pathway
  • ILEUSYN-PWY, L-isoleucine biosynthesis I (from threonine): ILEUSYN-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5101, L-isoleucine biosynthesis II: PWY-5101
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-5104, L-isoleucine biosynthesis IV: PWY-5104
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TransportSeed_Light&oldid=24715"