Difference between revisions of "Tiso gene 14877"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DADPKIN-RXN DADPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** adenylate_kinase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMET-RXN HOMOCYSMET-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy....")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DADPKIN-RXN DADPKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMET-RXN HOMOCYSMET-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** ORF
+
−
** adenylate_kinase_domain-containing_protein_1
+
−
** nucleoside_diphosphate_kinase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
+
** [http://enzyme.expasy.org/EC/2.1.1.14 EC-2.1.1.14]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DADP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[DATP]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[HOMO-CYS]][c] '''+''' 1 [[CPD-1302]][c] '''<=>''' 1 [[CPD-1301]][c] '''+''' 1 [[MET]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dADP[c] '''+''' 1 ATP[c] '''=>''' 1 dATP[c] '''+''' 1 ADP[c]
+
** 1 L-homocysteine[c] '''+''' 1 N5-methyl--tetrahydropteroyl tri-L-glutamate[c] '''<=>''' 1 tetrahydropteroyl tri-L-glutamate[c] '''+''' 1 L-methionine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17272]]
+
* [[Tiso_gene_1602]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17271]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9290]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_195]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18224]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16529]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7220 PWY-7220]
+
* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-702]], L-methionine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-702 PWY-702]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=HSERMETANA-PWY HSERMETANA-PWY]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7224]], purine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7224 PWY-7224]
+
* [[PWY-6151]], S-adenosyl-L-methionine cycle I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6151 PWY-6151]
 
** '''4''' reactions found over '''6''' reactions in the full pathway
 
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7227 PWY-7227]
+
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[synechocystis]]
+
*** Tool: [[pathwaytools]]
−
*** [[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27674 27674]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21196 21196]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01137 R01137]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04405 R04405]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=ORF}}
+
** [http://www.uniprot.org/uniprot/P25665 P25665]
−
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
+
** [http://www.uniprot.org/uniprot/P45331 P45331]
−
{{#set: common name=nucleoside_diphosphate_kinase}}
+
** [http://www.uniprot.org/uniprot/Q9PN94 Q9PN94]
−
{{#set: ec number=EC-2.7.4.6}}
+
** [http://www.uniprot.org/uniprot/O26869 O26869]
−
{{#set: gene associated=Tiso_gene_17272|Tiso_gene_17271|Tiso_gene_9290|Tiso_gene_195|Tiso_gene_18224|Tiso_gene_16529}}
+
** [http://www.uniprot.org/uniprot/Q9JUT6 Q9JUT6]
−
{{#set: in pathway=PWY-7220|PWY-7224|PWY-7227}}
+
** [http://www.uniprot.org/uniprot/Q9CG55 Q9CG55]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P05694 P05694]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/Q42699 Q42699]
−
{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
+
** [http://www.uniprot.org/uniprot/Q39586 Q39586]
−
{{#set: reconstruction category=manual}}
+
** [http://www.uniprot.org/uniprot/O48613 O48613]
−
{{#set: reconstruction source=primary_network}}
+
** [http://www.uniprot.org/uniprot/P93263 P93263]
 +
** [http://www.uniprot.org/uniprot/Q9UT19 Q9UT19]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-2.1.1.14}}
 +
{{#set: gene associated=Tiso_gene_1602}}
 +
{{#set: in pathway=PWY-5041|PWY-702|HSERMETANA-PWY|PWY-6151|HOMOSER-METSYN-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 19:36, 18 March 2018

Reaction HOMOCYSMET-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-homocysteine[c] + 1 N5-methyl--tetrahydropteroyl tri-L-glutamate[c] <=> 1 tetrahydropteroyl tri-L-glutamate[c] + 1 L-methionine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5041, S-adenosyl-L-methionine cycle II: PWY-5041
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-702, L-methionine biosynthesis II: PWY-702
    • 5 reactions found over 6 reactions in the full pathway
  • HSERMETANA-PWY, L-methionine biosynthesis III: HSERMETANA-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6151, S-adenosyl-L-methionine cycle I: PWY-6151
    • 4 reactions found over 6 reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I: HOMOSER-METSYN-PWY
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




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