Difference between revisions of "RXN1G-285"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULOKIN-RXN RIBULOKIN-RXN] == * direction: ** REVERSIBLE * common name: ** ribulokinase * ec numb...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULOKIN-RXN RIBULOKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ribulokinase
+
** farnesyltranstransferase
 +
** geranylgeranyl_pyrophosphate_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.16 EC-2.7.1.16]
+
** [http://enzyme.expasy.org/EC/2.5.1.29 EC-2.5.1.29]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[Ribuloses]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[Ribulose-phosphates]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 ribulose[c] '''<=>''' 1 H+[c] '''+''' 1 L(or D)-ribulose 5-phosphate[c] '''+''' 1 ADP[c]
+
** 1 isopentenyl diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 geranylgeranyl diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16670]]
+
* [[Tiso_gene_16284]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_7305]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
***AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7492]], paspaline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7492 PWY-7492]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6659]], fusicoccin A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6659 PWY-6659]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6691]], plaunotol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7517]], brassicicene C biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7720]], ophiobolin F biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7720 PWY-7720]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17653 17653]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06188 P06188]
+
** [http://www.uniprot.org/uniprot/P39464 P39464]
−
** [http://www.uniprot.org/uniprot/P08204 P08204]
+
** [http://www.uniprot.org/uniprot/P24322 P24322]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/P80042 P80042]
−
{{#set: common name=ribulokinase}}
+
** [http://www.uniprot.org/uniprot/Q12051 Q12051]
−
{{#set: ec number=EC-2.7.1.16}}
+
** [http://www.uniprot.org/uniprot/P95999 P95999]
−
{{#set: gene associated=Tiso_gene_16670}}
+
** [http://www.uniprot.org/uniprot/P48368 P48368]
−
{{#set: in pathway=}}
+
** [http://www.uniprot.org/uniprot/P93227 P93227]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P93228 P93228]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q42698 Q42698]
−
{{#set: reconstruction source=in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/Q43133 Q43133]
 +
** [http://www.uniprot.org/uniprot/Q42866 Q42866]
 +
** [http://www.uniprot.org/uniprot/P54976 P54976]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=farnesyltranstransferase}}
 +
{{#set: common name=geranylgeranyl_pyrophosphate_synthase}}
 +
{{#set: ec number=EC-2.5.1.29}}
 +
{{#set: gene associated=Tiso_gene_16284|Tiso_gene_7305}}
 +
{{#set: in pathway=PWY-7736|PWY-7492|PWY-6659|PWY-6691|PWY-5120|PWY-7517|PWY-7721|PWY-7720}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 19:45, 18 March 2018

Reaction FARNESYLTRANSTRANSFERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • farnesyltranstransferase
    • geranylgeranyl_pyrophosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7492, paspaline biosynthesis: PWY-7492
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6659, fusicoccin A biosynthesis: PWY-6659
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6691, plaunotol biosynthesis: PWY-6691
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5120, geranylgeranyl diphosphate biosynthesis: PWY-5120
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7517, brassicicene C biosynthesis: PWY-7517
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7720, ophiobolin F biosynthesis: PWY-7720
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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