Difference between revisions of "CPD-7682"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
(Created page with "Category:Gene == Gene Tiso_gene_2449 == * left end position: ** 6879 * transcription direction: ** POSITIVE * right end position: ** 7497 * centisome position: ** 35.44962...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] ==
+
== Gene Tiso_gene_2449 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 6879
−
* common name:
+
* transcription direction:
−
** ORF
+
** POSITIVE
−
** phenylalanine_trna_synthtetase
+
* right end position:
−
** alpha_subunit_of_phenylalanyl-trna_synthetase
+
** 7497
−
** ribosome_biogenesis_protein
+
* centisome position:
−
* ec number:
+
** 35.449627   
−
** [http://enzyme.expasy.org/EC/6.1.1.20 EC-6.1.1.20]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* [[ATPASE-RXN]]
−
** 1 [[PHE]][c] '''+''' 1 [[PHE-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
** in-silico_annotation
−
* With common name(s):
+
***ec-number
−
** 1 L-phenylalanine[c] '''+''' 1 a tRNAphe[c] '''+''' 1 ATP[c] '''=>''' 1 an L-phenylalanyl-[tRNAphe][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
−
 
+
** in-silico_annotation
−
== Genes associated with this reaction  ==
+
***ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-12195]]
−
* [[Tiso_gene_16650]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
* [[RXN-12196]]
−
* [[Tiso_gene_4232]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
* [[RXN0-5462]]
−
** EXPERIMENTAL_ANNOTATION
+
** in-silico_annotation
−
***EC-NUMBER
+
***ec-number
−
** [[pantograph]]-[[esiliculosus]]
+
== Pathways associated ==
−
* [[Tiso_gene_16467]]
+
* [[PWY-7184]]
−
** IN-SILICO_ANNOTATION
+
* [[PWY-7198]]
−
***EC-NUMBER
+
* [[PWY-6545]]
−
** EXPERIMENTAL_ANNOTATION
+
* [[PWY-7210]]
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1625]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways ==
+
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=6879}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19413 19413]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: right end position=7497}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
+
{{#set: centisome position=35.449627    }}
−
* UNIPROT:
+
{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
−
** [http://www.uniprot.org/uniprot/P94283 P94283]
+
{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
−
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
+
−
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
+
−
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
+
−
** [http://www.uniprot.org/uniprot/P56145 P56145]
+
−
** [http://www.uniprot.org/uniprot/O67620 O67620]
+
−
** [http://www.uniprot.org/uniprot/O73984 O73984]
+
−
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
+
−
** [http://www.uniprot.org/uniprot/Q58508 Q58508]
+
−
** [http://www.uniprot.org/uniprot/P56146 P56146]
+
−
** [http://www.uniprot.org/uniprot/O27545 O27545]
+
−
** [http://www.uniprot.org/uniprot/O26837 O26837]
+
−
** [http://www.uniprot.org/uniprot/O58391 O58391]
+
−
** [http://www.uniprot.org/uniprot/O83938 O83938]
+
−
** [http://www.uniprot.org/uniprot/P47436 P47436]
+
−
** [http://www.uniprot.org/uniprot/O67087 O67087]
+
−
** [http://www.uniprot.org/uniprot/O83059 O83059]
+
−
** [http://www.uniprot.org/uniprot/O84843 O84843]
+
−
** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
+
−
** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
+
−
** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
+
−
** [http://www.uniprot.org/uniprot/P47437 P47437]
+
−
** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
+
−
** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
+
−
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
+
−
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
+
−
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
+
−
** [http://www.uniprot.org/uniprot/P43819 P43819]
+
−
** [http://www.uniprot.org/uniprot/P94282 P94282]
+
−
** [http://www.uniprot.org/uniprot/O84481 O84481]
+
−
** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
+
−
** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
+
−
** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
+
−
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
+
−
** [http://www.uniprot.org/uniprot/P43820 P43820]
+
−
** [http://www.uniprot.org/uniprot/Q46107 Q46107]
+
−
** [http://www.uniprot.org/uniprot/P15434 P15434]
+
−
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
+
−
** [http://www.uniprot.org/uniprot/P37984 P37984]
+
−
** [http://www.uniprot.org/uniprot/P51346 P51346]
+
−
** [http://www.uniprot.org/uniprot/P75563 P75563]
+
−
** [http://www.uniprot.org/uniprot/P75564 P75564]
+
−
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
+
−
** [http://www.uniprot.org/uniprot/P95960 P95960]
+
−
** [http://www.uniprot.org/uniprot/P95961 P95961]
+
−
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
+
−
** [http://www.uniprot.org/uniprot/P08312 P08312]
+
−
** [http://www.uniprot.org/uniprot/P07395 P07395]
+
−
** [http://www.uniprot.org/uniprot/O42870 O42870]
+
−
** [http://www.uniprot.org/uniprot/O13432 O13432]
+
−
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
+
−
** [http://www.uniprot.org/uniprot/O42849 O42849]
+
−
** [http://www.uniprot.org/uniprot/P17921 P17921]
+
−
** [http://www.uniprot.org/uniprot/P17922 P17922]
+
−
** [http://www.uniprot.org/uniprot/P15625 P15625]
+
−
** [http://www.uniprot.org/uniprot/P08425 P08425]
+
−
** [http://www.uniprot.org/uniprot/P15624 P15624]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=phenylalanine_trna_synthtetase}}
+
−
{{#set: common name=alpha_subunit_of_phenylalanyl-trna_synthetase}}
+
−
{{#set: common name=ribosome_biogenesis_protein}}
+
−
{{#set: ec number=EC-6.1.1.20}}
+
−
{{#set: gene associated=Tiso_gene_16650|Tiso_gene_4232|Tiso_gene_16467|Tiso_gene_1625}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:47, 18 March 2018

Gene Tiso_gene_2449

  • left end position:
    • 6879
  • transcription direction:
    • POSITIVE
  • right end position:
    • 7497
  • centisome position:
    • 35.449627
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-7682&oldid=26875"