Difference between revisions of "Biomass-Compositions"

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(Created page with "Category:Gene == Gene Tiso_gene_13092 == * left end position: ** 26 * transcription direction: ** POSITIVE * right end position: ** 2421 * centisome position: ** 0.3977359...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11521 RXN-11521] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
Line 1: Line 1:
[[Category:Gene]]
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[[Category:Reaction]]
== Gene Tiso_gene_13092 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11521 RXN-11521] ==
* left end position:
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* direction:
** 26
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** LEFT-TO-RIGHT
* transcription direction:
+
** POSITIVE
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* right end position:
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** 2421
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* centisome position:
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** 0.39773598   
+
 
* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
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== Reaction Formula ==
* [[GDPMANDEHYDRA-RXN]]
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* With identifiers:
** experimental_annotation
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** 1 [[WATER]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[7-METHYLXANTHINE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-12481]][c]
***automated-name-match
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* With common name(s):
== Pathways associated ==
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** 1 H2O[c] '''+''' 1 oxygen[c] '''+''' 1 7-methylxanthine[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 7-methylurate[c]
* [[GDPRHAMSYN-PWY]]
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* [[PWY-7573]]
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== Genes associated with this reaction  ==
* [[PWY-5740]]
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Genes have been associated with this reaction based on different elements listed below.
* [[PWY-66]]
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* [[Tiso_gene_11775]]
* [[PWY-5738]]
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** [[pantograph]]-[[athaliana]]
* [[PWY-5739]]
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== Pathways  ==
 +
* [[PWY-6632]], caffeine degradation IV (bacteria, via demethylation and oxidation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6632 PWY-6632]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
{{#set: left end position=26}}
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* LIGAND-RXN:
{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07979 R07979]
{{#set: right end position=2421}}
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: centisome position=0.39773598    }}
+
{{#set: gene associated=Tiso_gene_11775}}
{{#set: reaction associated=GDPMANDEHYDRA-RXN}}
+
{{#set: in pathway=PWY-6632}}
{{#set: pathway associated=GDPRHAMSYN-PWY|PWY-7573|PWY-5740|PWY-66|PWY-5738|PWY-5739}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 18:48, 18 March 2018

Reaction RXN-11521

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6632, caffeine degradation IV (bacteria, via demethylation and oxidation): PWY-6632
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links