Difference between revisions of "Tiso gene 10288"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16630 RXN-16630] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-(acyl-carrier-pro...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ADIPATE-DEHYDROG-RXN 2-KETO-ADIPATE-DEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16630 RXN-16630] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ADIPATE-DEHYDROG-RXN 2-KETO-ADIPATE-DEHYDROG-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 3-oxoacyl-(acyl-carrier-protein)
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[11Z-3-oxo-icos-11-enoyl-ACPs]][c] '''=>''' 1 [[3R-11Z-3-hydroxy-icos-11-enoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[2K-ADIPATE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[GLUTARYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 an (11Z)-3-oxo-icos-11-enoyl-[acp][c] '''=>''' 1 a (3R,11Z)-3-hydroxy-icos-11-enoyl-[acp][c] '''+''' 1 NADP+[c]
+
** 1 2-oxoadipate[c] '''+''' 1 NAD+[c] '''+''' 1 coenzyme A[c] '''=>''' 1 CO2[c] '''+''' 1 NADH[c] '''+''' 1 glutaryl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_9885]]
+
* [[Tiso_gene_10209]]
−
** EXPERIMENTAL_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
−
***EC-NUMBER
+
* [[Tiso_gene_9330]]
−
* [[Tiso_gene_13083]]
+
** [[pantograph]]-[[athaliana]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7663]], gondoate biosynthesis (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7663 PWY-7663]
+
* [[PWY-5652]], 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5652 PWY-5652]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-425]], L-lysine degradation II (L-pipecolate pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30795 30795]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01933 R01933]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
+
{{#set: gene associated=Tiso_gene_10209|Tiso_gene_9330}}
−
{{#set: ec number=EC-1.1.1.100}}
+
{{#set: in pathway=PWY-5652|PWY66-425|LYSINE-DEG1-PWY}}
−
{{#set: gene associated=Tiso_gene_9885|Tiso_gene_13083}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: in pathway=PWY-7663}}
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:49, 18 March 2018

Reaction 2-KETO-ADIPATE-DEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5652, 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA: PWY-5652
    • 1 reactions found over 5 reactions in the full pathway
  • PWY66-425, L-lysine degradation II (L-pipecolate pathway): PWY66-425
    • 3 reactions found over 8 reactions in the full pathway
  • LYSINE-DEG1-PWY, L-lysine degradation XI (mammalian): LYSINE-DEG1-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




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