Difference between revisions of "TRNA-URACIL-5--METHYLTRANSFERASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1126 RXN-1126] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/6....")
(Created page with "Category:Gene == Gene Tiso_gene_13075 == * left end position: ** 1571 * transcription direction: ** NEGATIVE * right end position: ** 6035 * centisome position: ** 23.9847...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1126 RXN-1126] ==
+
== Gene Tiso_gene_13075 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 1571
−
* ec number:
+
* transcription direction:
−
** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
+
** NEGATIVE
 +
* right end position:
 +
** 6035
 +
* centisome position:
 +
** 23.984734   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* [[NADH-DEHYDROG-A-RXN]]
−
** 1 [[CPD-676]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[CAFFEOYL-COA]][c]
+
** in-silico_annotation
−
* With common name(s):
+
***ec-number
−
** 1 trans-caffeate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 trans-caffeoyl-CoA[c]
+
== Pathways associated ==
−
 
+
* [[PWY-4302]]
−
== Genes associated with this reaction  ==
+
* [[PWY-3781]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[PWY-6692]]
−
* [[Tiso_gene_12275]]
+
* [[PWY0-1334]]
−
** [[pantograph]]-[[athaliana]]
+
* [[PWY0-1335]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[PWY-5083]]
−
* [[Tiso_gene_14183]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways ==
+
−
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
+
−
** '''9''' reactions found over '''19''' reactions in the full pathway
+
−
* [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
+
−
** '''3''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY-6673]], caffeoylglucarate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6673 PWY-6673]
+
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
*** [[athaliana]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: left end position=1571}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01943 R01943]
+
{{#set: transcription direction=NEGATIVE}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=6035}}
−
{{#set: ec number=EC-6.2.1.12}}
+
{{#set: centisome position=23.984734    }}
−
{{#set: gene associated=Tiso_gene_12275|Tiso_gene_14183}}
+
{{#set: reaction associated=NADH-DEHYDROG-A-RXN}}
−
{{#set: in pathway=PWY-1121|PWY-7398|PWY-6673}}
+
{{#set: pathway associated=PWY-4302|PWY-3781|PWY-6692|PWY0-1334|PWY0-1335|PWY-5083}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus|athaliana}}
+

Revision as of 19:50, 18 March 2018

Gene Tiso_gene_13075

  • left end position:
    • 1571
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6035
  • centisome position:
    • 23.984734
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRNA-URACIL-5--METHYLTRANSFERASE-RXN&oldid=27271"