Difference between revisions of "Tiso gene 17237"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTSEMIALDEHYDROG-RXN GLUTSEMIALDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** g...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14426 CPD-14426] == * smiles: ** CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTSEMIALDEHYDROG-RXN GLUTSEMIALDEHYDROG-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14426 CPD-14426] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
 +
* inchi key:
 +
** InChIKey=NDRVWKXEWNMEEO-HVGANWHPSA-J
 
* common name:
 
* common name:
−
** glutamate-5-semialdehyde_dehydrogenase
+
** docosapentaenoyl-CoA
−
* ec number:
+
* molecular weight:
−
** [http://enzyme.expasy.org/EC/1.2.1.41 EC-1.2.1.41]
+
** 1075.997   
 
* Synonym(s):
 
* Synonym(s):
 +
** (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoyl-CoA
 +
** (7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[RXN-13446]]
−
** 1 [[NADPH]][c] '''+''' 1 [[L-GLUTAMATE-5-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NADP]][c]
+
* [[RXN-16082]]
−
* With common name(s):
+
== Reaction(s) known to produce the compound ==
−
** 1 NADPH[c] '''+''' 1 γ-L-glutamyl 5-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 phosphate[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''+''' 1 NADP+[c]
+
* [[RXN-13445]]
−
 
+
== Reaction(s) of unknown directionality ==
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_16258]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_16634]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
== Pathways  ==
+
−
* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PROSYN-PWY]], L-proline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PROSYN-PWY PROSYN-PWY]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
+
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
+
−
*** [[synechocystis]]
+
−
*** [[esiliculosus]]
+
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* PUBCHEM:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19541 19541]
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=71581114 71581114]
−
* LIGAND-RXN:
+
* CHEBI:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03313 R03313]
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=73870 73870]
−
* UNIPROT:
+
{{#set: smiles=CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
−
** [http://www.uniprot.org/uniprot/Q9JUK8 Q9JUK8]
+
{{#set: inchi key=InChIKey=NDRVWKXEWNMEEO-HVGANWHPSA-J}}
−
** [http://www.uniprot.org/uniprot/P45121 P45121]
+
{{#set: common name=docosapentaenoyl-CoA}}
−
** [http://www.uniprot.org/uniprot/P53000 P53000]
+
{{#set: molecular weight=1075.997    }}
−
** [http://www.uniprot.org/uniprot/P07004 P07004]
+
{{#set: common name=(7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoyl-CoA|(7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA}}
−
** [http://www.uniprot.org/uniprot/P17857 P17857]
+
{{#set: consumed by=RXN-13446|RXN-16082}}
−
** [http://www.uniprot.org/uniprot/P45638 P45638]
+
{{#set: produced by=RXN-13445}}
−
** [http://www.uniprot.org/uniprot/P54885 P54885]
+
−
** [http://www.uniprot.org/uniprot/O04226 O04226]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glutamate-5-semialdehyde_dehydrogenase}}
+
−
{{#set: ec number=EC-1.2.1.41}}
+
−
{{#set: gene associated=Tiso_gene_16258|Tiso_gene_16634}}
+
−
{{#set: in pathway=PWY-6922|PROSYN-PWY|ARGININE-SYN4-PWY|PWY-3341|CITRULBIO-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 18:51, 18 March 2018

Metabolite CPD-14426

  • smiles:
    • CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
  • inchi key:
    • InChIKey=NDRVWKXEWNMEEO-HVGANWHPSA-J
  • common name:
    • docosapentaenoyl-CoA
  • molecular weight:
    • 1075.997
  • Synonym(s):
    • (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoyl-CoA
    • (7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17237&oldid=27408"