Difference between revisions of "R524-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDOTRANS-RXN KDOTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-deoxy-d-manno-octul...")
(Created page with "Category:Gene == Gene Tiso_gene_3233 == * left end position: ** 14957 * transcription direction: ** NEGATIVE * right end position: ** 17016 * centisome position: ** 87.141...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDOTRANS-RXN KDOTRANS-RXN] ==
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== Gene Tiso_gene_3233 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 14957
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* common name:
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* transcription direction:
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** 3-deoxy-d-manno-octulosonic-acid_transferase
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.4.99.12 EC-2.4.99.12]
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** 17016
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* centisome position:
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** 87.14170   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[GSHTRAN-RXN]]
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** 1 [[CMP-KDO]][c] '''+''' 1 [[LIPID-IV-A]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[KDO-LIPID-IVA]][c] '''+''' 1 [[PROTON]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 CMP-3-deoxy-β-D-manno-octulosonate[c] '''+''' 1 lipid IVA[c] '''=>''' 1 CMP[c] '''+''' 1 α-Kdo-(2→6)-lipid IVA[c] '''+''' 1 H+[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[GST-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_14462]]
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***ec-number
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** IN-SILICO_ANNOTATION
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** experimental_annotation
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***AUTOMATED-NAME-MATCH
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***ec-number
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* [[Tiso_gene_14463]]
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* [[RXN-13673]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***AUTOMATED-NAME-MATCH
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***ec-number
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** [[pantograph]]-[[athaliana]]
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** experimental_annotation
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== Pathways  ==
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***ec-number
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* [[KDOSYN-PWY]], Kdo transfer to lipid IVA I: [http://metacyc.org/META/NEW-IMAGE?object=KDOSYN-PWY KDOSYN-PWY]
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* [[RXN-15680]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-7675]], Kdo transfer to lipid IVA II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7675 PWY-7675]
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***ec-number
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** experimental_annotation
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== Reconstruction information  ==
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***ec-number
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* [[orthology]]:
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== Pathways associated ==
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** [[pantograph]]:
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* [[PWY-7112]]
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*** [[athaliana]]
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* [[PWY-6842]]
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* [[annotation]]:
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* [[PWY-4061]]
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** [[pathwaytools]]:
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* [[PWY-7533]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=14957}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28066 28066]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=17016}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04658 R04658]
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{{#set: centisome position=87.14170    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=GSHTRAN-RXN|GST-RXN|RXN-13673|RXN-15680}}
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{{#set: common name=3-deoxy-d-manno-octulosonic-acid_transferase}}
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{{#set: pathway associated=PWY-7112|PWY-6842|PWY-4061|PWY-7533}}
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{{#set: ec number=EC-2.4.99.12}}
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{{#set: gene associated=Tiso_gene_14462|Tiso_gene_14463}}
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{{#set: in pathway=KDOSYN-PWY|PWY-7675}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana}}
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{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 19:52, 18 March 2018

Gene Tiso_gene_3233

  • left end position:
    • 14957
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 17016
  • centisome position:
    • 87.14170
  • Synonym(s):

Reactions associated

  • GSHTRAN-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • GST-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-13673
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-15680
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=R524-RXN&oldid=27540"