Difference between revisions of "Tiso gene 19367"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12196 RXN-12196] == * direction: ** LEFT-TO-RIGHT * common name: ** uridine_kinase ** ORF ** at...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Guanine34-in-tRNAs Guanine34-in-tRNAs] == * common name: ** a guanine34 in tRNA * Synonym(s):...")
Line 1: Line 1:
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12196 RXN-12196] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Guanine34-in-tRNAs Guanine34-in-tRNAs] ==
−
* direction:
+
−
** LEFT-TO-RIGHT
+
 
* common name:
 
* common name:
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** uridine_kinase
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** a guanine34 in tRNA
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** ORF
+
−
** atp-dependent_metalloprotease
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−
** member_of_the_hsp104_clp_superfamily
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−
** helicase_mov-10-_-like
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−
** replication_factor_c_subunit_5
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−
** replication_factor_c_subunit_2
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−
** at1g33290
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−
** atpase_family_aaa_domain-containing_protein_2b-_partial
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−
** replication_factor_c_subunit_3
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−
** replication_control_protein_1_like
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−
** aaa_family_cdc48_subfamily
+
−
** adenylate_guanylate
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−
** nfx1-type_zinc_finger-containing_protein_1
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−
** dna-binding_protein_smubp-2
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−
** e3_ubiquitin-protein_ligase_rnf213-like
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−
** atp-dependent_zinc_metalloprotease
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−
** cytosolic_fe-s_cluster_assembly_factor_nubp1_homolog
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−
** uncharacterized_transmembrane_protein_ddb_g0290641
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−
** isoform_m_of_dna_helicase_mcm9
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−
** 26s_proteaseregulatorysubunit6bhomolog
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−
** replication_factor_c_subunit_1
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−
** trna-splicing_endonuclease_positive_effector
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−
** adenylate_kinase_domain-containing_protein_1
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−
** gtpase_der
+
−
** origin_recognition_complex_subunit_4
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−
** fidgetin-like_protein1
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−
** hsp104
+
−
** atpase_aaa
+
−
** katanin_p60_atpase-containing_subunit_a-like_2
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−
** sh2_domain_containing_protein
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−
** atpase_family_associated_with_various_cellular_activities
+
−
** atpase_afg2_protein
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−
** atp-dependent_proteaseatpasesubunit
+
−
* ec number:
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−
** [http://enzyme.expasy.org/EC/3.6.1.15 EC-3.6.1.15]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN0-1321]]
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** 1 [[UTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 UTP[c] '''+''' 1 H2O[c] '''=>''' 1 UDP[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
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* [[QUEUOSINE-TRNA-RIBOSYLTRANSFERASE-RXN]]
−
 
+
−
== Genes associated with this reaction  ==
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−
Genes have been associated with this reaction based on different elements listed below.
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−
* [[Tiso_gene_2924]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_7734]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_2889]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_20353]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
* [[Tiso_gene_546]]
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−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2068]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17751]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_3287]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13653]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_1291]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14239]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2897]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8950]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8164]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_572]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4726]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_674]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13738]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8949]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14474]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9926]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17449]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19098]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2929]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2447]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1444]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6614]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10282]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1541]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5166]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_829]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_623]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7745]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12148]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_538]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15043]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_537]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16478]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_250]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2449]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9659]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7387]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2176]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8859]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3653]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9114]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13681]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_195]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9004]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_38]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11098]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9423]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6180]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13325]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8860]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10221]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4194]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4155]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8763]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1960]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9959]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4026]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5529]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17616]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14816]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_873]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14227]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_12899]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4596]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_20327]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_199]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4436]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8601]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13268]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4192]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4437]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8584]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2452]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1984]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4092]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1959]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2451]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7123]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15465]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19350]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9243]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2450]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14646]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4330]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13264]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11012]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8461]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9234]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2448]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1611]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2631]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14226]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1610]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12149]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6181]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5525]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: common name=a guanine34 in tRNA}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00159 R00159]
+
{{#set: consumed by=RXN0-1321}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reversible reaction associated=QUEUOSINE-TRNA-RIBOSYLTRANSFERASE-RXN}}
−
{{#set: common name=uridine_kinase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=atp-dependent_metalloprotease}}
+
−
{{#set: common name=member_of_the_hsp104_clp_superfamily}}
+
−
{{#set: common name=helicase_mov-10-_-like}}
+
−
{{#set: common name=replication_factor_c_subunit_5}}
+
−
{{#set: common name=replication_factor_c_subunit_2}}
+
−
{{#set: common name=at1g33290}}
+
−
{{#set: common name=atpase_family_aaa_domain-containing_protein_2b-_partial}}
+
−
{{#set: common name=replication_factor_c_subunit_3}}
+
−
{{#set: common name=replication_control_protein_1_like}}
+
−
{{#set: common name=aaa_family_cdc48_subfamily}}
+
−
{{#set: common name=adenylate_guanylate}}
+
−
{{#set: common name=nfx1-type_zinc_finger-containing_protein_1}}
+
−
{{#set: common name=dna-binding_protein_smubp-2}}
+
−
{{#set: common name=e3_ubiquitin-protein_ligase_rnf213-like}}
+
−
{{#set: common name=atp-dependent_zinc_metalloprotease}}
+
−
{{#set: common name=cytosolic_fe-s_cluster_assembly_factor_nubp1_homolog}}
+
−
{{#set: common name=uncharacterized_transmembrane_protein_ddb_g0290641}}
+
−
{{#set: common name=isoform_m_of_dna_helicase_mcm9}}
+
−
{{#set: common name=26s_proteaseregulatorysubunit6bhomolog}}
+
−
{{#set: common name=replication_factor_c_subunit_1}}
+
−
{{#set: common name=trna-splicing_endonuclease_positive_effector}}
+
−
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
+
−
{{#set: common name=gtpase_der}}
+
−
{{#set: common name=origin_recognition_complex_subunit_4}}
+
−
{{#set: common name=fidgetin-like_protein1}}
+
−
{{#set: common name=hsp104}}
+
−
{{#set: common name=atpase_aaa}}
+
−
{{#set: common name=katanin_p60_atpase-containing_subunit_a-like_2}}
+
−
{{#set: common name=sh2_domain_containing_protein}}
+
−
{{#set: common name=atpase_family_associated_with_various_cellular_activities}}
+
−
{{#set: common name=atpase_afg2_protein}}
+
−
{{#set: common name=atp-dependent_proteaseatpasesubunit}}
+
−
{{#set: ec number=EC-3.6.1.15}}
+
−
{{#set: gene associated=Tiso_gene_2924|Tiso_gene_7734|Tiso_gene_2889|Tiso_gene_20353|Tiso_gene_546|Tiso_gene_2068|Tiso_gene_17751|Tiso_gene_3287|Tiso_gene_13653|Tiso_gene_1291|Tiso_gene_14239|Tiso_gene_2897|Tiso_gene_8950|Tiso_gene_8164|Tiso_gene_572|Tiso_gene_4726|Tiso_gene_674|Tiso_gene_13738|Tiso_gene_8949|Tiso_gene_14474|Tiso_gene_9926|Tiso_gene_17449|Tiso_gene_19098|Tiso_gene_2929|Tiso_gene_2447|Tiso_gene_1444|Tiso_gene_6614|Tiso_gene_10282|Tiso_gene_1541|Tiso_gene_5166|Tiso_gene_829|Tiso_gene_623|Tiso_gene_7745|Tiso_gene_12148|Tiso_gene_538|Tiso_gene_15043|Tiso_gene_537|Tiso_gene_16478|Tiso_gene_250|Tiso_gene_2449|Tiso_gene_9659|Tiso_gene_7387|Tiso_gene_2176|Tiso_gene_8859|Tiso_gene_3653|Tiso_gene_9114|Tiso_gene_13681|Tiso_gene_195|Tiso_gene_9004|Tiso_gene_38|Tiso_gene_11098|Tiso_gene_9423|Tiso_gene_6180|Tiso_gene_13325|Tiso_gene_8860|Tiso_gene_10221|Tiso_gene_4194|Tiso_gene_4155|Tiso_gene_8763|Tiso_gene_1960|Tiso_gene_9959|Tiso_gene_4026|Tiso_gene_5529|Tiso_gene_17616|Tiso_gene_14816|Tiso_gene_873|Tiso_gene_14227|Tiso_gene_12899|Tiso_gene_4596|Tiso_gene_20327|Tiso_gene_199|Tiso_gene_4436|Tiso_gene_8601|Tiso_gene_13268|Tiso_gene_4192|Tiso_gene_4437|Tiso_gene_8584|Tiso_gene_2452|Tiso_gene_1984|Tiso_gene_4092|Tiso_gene_1959|Tiso_gene_2451|Tiso_gene_7123|Tiso_gene_15465|Tiso_gene_19350|Tiso_gene_9243|Tiso_gene_2450|Tiso_gene_14646|Tiso_gene_4330|Tiso_gene_13264|Tiso_gene_11012|Tiso_gene_8461|Tiso_gene_9234|Tiso_gene_2448|Tiso_gene_1611|Tiso_gene_2631|Tiso_gene_14226|Tiso_gene_1610|Tiso_gene_12149|Tiso_gene_6181|Tiso_gene_5525}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 19:01, 18 March 2018

Metabolite Guanine34-in-tRNAs

  • common name:
    • a guanine34 in tRNA
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19367&oldid=28298"