Difference between revisions of "Tiso gene 8007"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9524 RXN-9524] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-octanoyl-[acyl-carrier...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.176-RXN 2.3.1.176-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9524 RXN-9524] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.176-RXN 2.3.1.176-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 3-oxo-octanoyl-[acyl-carrier protein] reductase
 
−
** polyketide_synthase
 
−
** 3-oxoacyl-(acyl-carrier-protein)
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.3.1.176 EC-2.3.1.176]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[3-Oxo-octanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[3-Hydroxy-octanoyl-ACPs]][c]
+
** 1 [[CPD-7257]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-202]][c] '''+''' 1 [[PROPIONYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 a 3-oxo-octanoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxyoctanoyl-[acp][c]
+
** 1 3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 choloyl-CoA[c] '''+''' 1 propanoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_624]]
+
* [[Tiso_gene_16181]]
−
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[athaliana]]
−
* [[Tiso_gene_10415]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_13083]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_500]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_136]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_13394]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_9885]]
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_10876]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_16579]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
* [[Tiso_gene_135]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY-6061]], bile acid biosynthesis, neutral pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6061 PWY-6061]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''3''' reactions found over '''29''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
* [[manual]]:
+
*** Tool: [[pantograph]]
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16865 16865]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03719 R03719]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxo-octanoyl-[acyl-carrier protein] reductase}}
+
{{#set: ec number=EC-2.3.1.176}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: gene associated=Tiso_gene_16181}}
−
{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
+
{{#set: in pathway=PWY-6061}}
−
{{#set: ec number=EC-2.3.1.86}}
+
−
{{#set: ec number=EC-2.3.1.85}}
+
−
{{#set: ec number=EC-1.1.1.100}}
+
−
{{#set: gene associated=Tiso_gene_624|Tiso_gene_10415|Tiso_gene_13083|Tiso_gene_500|Tiso_gene_136|Tiso_gene_13394|Tiso_gene_9885|Tiso_gene_10876|Tiso_gene_16579|Tiso_gene_135}}
+
−
{{#set: in pathway=PWY-5971|PWY-5994}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=synechocystis|esiliculosus}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 01:02, 19 March 2018

Reaction 2.3.1.176-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA[c] + 1 coenzyme A[c] => 1 choloyl-CoA[c] + 1 propanoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6061, bile acid biosynthesis, neutral pathway: PWY-6061
    • 3 reactions found over 29 reactions in the full pathway

Reconstruction information

External links




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