Difference between revisions of "Tiso gene 342"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13039 RXN-13039] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoate-protein_ligase_a **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** phosphoseri...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13039 RXN-13039] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** lipoate-protein_ligase_a
+
** ORF
−
** lipoate-protein_ligase
+
** phosphoserine_aminotransferase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.6.1.52 EC-2.6.1.52]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Gcv-H]][c] '''+''' 1 [[LIPOYL-AMP]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c]
+
** 1 [[3-P-SERINE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] '''+''' 1 lipoyl-adenylate[c] '''=>''' 2 H+[c] '''+''' 1 AMP[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c]
+
** 1 3-phospho-L-serine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-phospho-hydroxypyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4493]]
+
* [[Tiso_gene_15686]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
−
* [[Tiso_gene_17215]]
+
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17123]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
−
* [[Tiso_gene_17216]]
+
** EXPERIMENTAL_ANNOTATION
−
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
−
***AUTOMATED-NAME-MATCH
+
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_4494]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_8713]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6984]], lipoate salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6984 PWY-6984]
+
* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=lipoate-protein_ligase_a}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14329 14329]
−
{{#set: common name=lipoate-protein_ligase}}
+
* LIGAND-RXN:
−
{{#set: gene associated=Tiso_gene_4493|Tiso_gene_17215|Tiso_gene_17216|Tiso_gene_4494|Tiso_gene_8713}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04173 R04173]
−
{{#set: in pathway=PWY-6984}}
+
* UNIPROT:
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P10658 P10658]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P23721 P23721]
−
{{#set: reconstruction source=in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/Q9PIH3 Q9PIH3]
 +
** [http://www.uniprot.org/uniprot/Q9CHW5 Q9CHW5]
 +
** [http://www.uniprot.org/uniprot/P44336 P44336]
 +
** [http://www.uniprot.org/uniprot/O34370 O34370]
 +
** [http://www.uniprot.org/uniprot/P62676 P62676]
 +
** [http://www.uniprot.org/uniprot/P33330 P33330]
 +
** [http://www.uniprot.org/uniprot/P19689 P19689]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=phosphoserine_aminotransferase}}
 +
{{#set: ec number=EC-2.6.1.52}}
 +
{{#set: gene associated=Tiso_gene_15686|Tiso_gene_17123}}
 +
{{#set: in pathway=SERSYN-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 01:03, 19 March 2018

Reaction PSERTRANSAM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • phosphoserine_aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SERSYN-PWY, L-serine biosynthesis: SERSYN-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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