Difference between revisions of "DNA-N4-Methylcytosine"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RETINOL-DEHYDROGENASE-RXN RETINOL-DEHYDROGENASE-RXN] == * direction: ** REVERSIBLE * common name: *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14796 RXN-14796] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase * e...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RETINOL-DEHYDROGENASE-RXN RETINOL-DEHYDROGENASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14796 RXN-14796] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** all-trans-retinol dehydrogenase (NAD)
+
** acyl-coenzyme_a_oxidase
−
** dehydrogenase_reductase_sdr_family_member_on_chromosome_x-like
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.105 EC-1.1.1.105]
+
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
 
* Synonym(s):
 
* Synonym(s):
−
** all-trans retinol dehydrogenase
 
−
** retinal reductase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-13524]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[RETINAL]][c]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-15684]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-15685]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 all-trans-retinol[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 all-trans-retinal[c]
+
** 1 oxygen[c] '''+''' 1 5-cis, 7-trans-tetradecadienoyl-CoA[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18459]]
+
* [[Tiso_gene_18566]]
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17086]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7340]], 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7340 PWY-7340]
 +
** '''3''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[athaliana]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
* Category: [[annotation]]
−
* [[annotation]]:
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pathwaytools]]:
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21284 21284]
+
{{#set: common name=acyl-coenzyme_a_oxidase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-1.3.3.6}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02124 R02124]
+
{{#set: gene associated=Tiso_gene_18566}}
−
* UNIPROT:
+
{{#set: in pathway=PWY-7340}}
−
** [http://www.uniprot.org/uniprot/P50169 P50169]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q64437 Q64437]
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/P40394 P40394]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P50170 P50170]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=all-trans-retinol dehydrogenase (NAD)}}
+
−
{{#set: common name=dehydrogenase_reductase_sdr_family_member_on_chromosome_x-like}}
+
−
{{#set: ec number=EC-1.1.1.105}}
+
−
{{#set: common name=all-trans retinol dehydrogenase|retinal reductase}}
+
−
{{#set: gene associated=Tiso_gene_18459|Tiso_gene_17086}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 01:13, 19 March 2018

Reaction RXN-14796

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-coenzyme_a_oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 oxygen[c] + 1 5-cis, 7-trans-tetradecadienoyl-CoA[c] => 1 hydrogen peroxide[c] + 1 2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7340, 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast): PWY-7340
    • 3 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DNA-N4-Methylcytosine&oldid=29238"