Difference between revisions of "OrDC"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_2485 == * left end position: ** 3231 * transcription direction: ** NEGATIVE * right end position: ** 5826 * centisome position: ** 16.80362...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13443 RXN-13443] == * direction: ** LEFT-TO-RIGHT * common name: ** chloroplast_beta-keto_acyl_...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_2485 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13443 RXN-13443] ==
−
* left end position:
+
* direction:
−
** 3231
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** chloroplast_beta-keto_acyl_reductase
−
* right end position:
+
* ec number:
−
** 5826
+
** [http://enzyme.expasy.org/EC/1.1.1.330 EC-1.1.1.330]
−
* centisome position:
+
−
** 16.80362   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ARGSUCCINLYA-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[CPD-14423]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-14424]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
+
** 1 NAD(P)H[c] '''+''' 1 3-oxo-docosapentaenoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 (5Z,8Z,11Z,14Z,17Z)-3R-hydroxy-docosapentaenoyl-CoA[c] '''+''' 1 NAD(P)+[c]
−
***ec-number
+
 
−
** [[pantograph]]-[[athaliana]]
+
== Genes associated with this reaction  ==
−
** [[pantograph]]-[[synechocystis]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_9871]]
−
** [[pantograph]]-[[creinhardtii]]
+
** IN-SILICO_ANNOTATION
−
* [[RXN-22]]
+
***EC-NUMBER
−
** in-silico_annotation
+
** EXPERIMENTAL_ANNOTATION
−
***ec-number
+
***EC-NUMBER
−
** experimental_annotation
+
* [[Tiso_gene_9885]]
−
***ec-number
+
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_13083]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
== Pathways associated ==
+
== Pathways ==
−
* [[PWY-5154]]
+
* [[PWY-7053]], docosahexaenoate biosynthesis I (lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053]
−
* [[PWY-5]]
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[ARGSYN-PWY]]
+
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
−
* [[PWY-4984]]
+
** '''14''' reactions found over '''14''' reactions in the full pathway
−
* [[ARGSYNBSUB-PWY]]
+
* [[PWY-7727]], docosahexaenoate biosynthesis IV (4-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7727 PWY-7727]
−
* [[PWY-4983]]
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7400]]
+
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3231}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=NEGATIVE}}
+
{{#set: common name=chloroplast_beta-keto_acyl_reductase}}
−
{{#set: right end position=5826}}
+
{{#set: ec number=EC-1.1.1.330}}
−
{{#set: centisome position=16.80362    }}
+
{{#set: gene associated=Tiso_gene_9871|Tiso_gene_9885|Tiso_gene_13083}}
−
{{#set: reaction associated=ARGSUCCINLYA-RXN|RXN-22}}
+
{{#set: in pathway=PWY-7053|PWY-7606|PWY-7727}}
−
{{#set: pathway associated=PWY-5154|PWY-5|ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4983|PWY-7400}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 01:13, 19 March 2018

Reaction RXN-13443

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • chloroplast_beta-keto_acyl_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD(P)H[c] + 1 3-oxo-docosapentaenoyl-CoA[c] + 1 H+[c] => 1 (5Z,8Z,11Z,14Z,17Z)-3R-hydroxy-docosapentaenoyl-CoA[c] + 1 NAD(P)+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7053, docosahexaenoate biosynthesis I (lower eukaryotes): PWY-7053
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway
  • PWY-7727, docosahexaenoate biosynthesis IV (4-desaturase, mammals): PWY-7727
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=OrDC&oldid=29252"