Difference between revisions of "RXN1G-4355"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UREASE-RXN UREASE-RXN] == * direction: ** REVERSIBLE * common name: ** urease ** urease_accessory_p...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16136 RXN-16136] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UREASE-RXN UREASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16136 RXN-16136] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** urease
+
−
** urease_accessory_protein
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.1.5 EC-3.5.1.5]
+
** [http://enzyme.expasy.org/EC/1.1.1 EC-1.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[UREA]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 2 [[AMMONIUM]][c]
+
** 1 [[CPD-17387]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD-17388]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 urea[c] '''+''' 2 H+[c] '''<=>''' 1 CO2[c] '''+''' 2 ammonium[c]
+
** 1 (3S)-hydroxy-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 3-oxo-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_3909]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_794]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5704]], urea degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5704 PWY-5704]
+
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''14''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00131 R00131]
+
{{#set: ec number=EC-1.1.1}}
−
* UNIPROT:
+
{{#set: in pathway=PWY-7606}}
−
** [http://www.uniprot.org/uniprot/P17337 P17337]
+
−
** [http://www.uniprot.org/uniprot/P18316 P18316]
+
−
** [http://www.uniprot.org/uniprot/Q07399 Q07399]
+
−
** [http://www.uniprot.org/uniprot/P44393 P44393]
+
−
** [http://www.uniprot.org/uniprot/P17338 P17338]
+
−
** [http://www.uniprot.org/uniprot/Q07398 Q07398]
+
−
** [http://www.uniprot.org/uniprot/P17088 P17088]
+
−
** [http://www.uniprot.org/uniprot/Q03282 Q03282]
+
−
** [http://www.uniprot.org/uniprot/Q9R5F8 Q9R5F8]
+
−
** [http://www.uniprot.org/uniprot/P17339 P17339]
+
−
** [http://www.uniprot.org/uniprot/Q07397 Q07397]
+
−
** [http://www.uniprot.org/uniprot/P17087 P17087]
+
−
** [http://www.uniprot.org/uniprot/Q08716 Q08716]
+
−
** [http://www.uniprot.org/uniprot/P17086 P17086]
+
−
** [http://www.uniprot.org/uniprot/Q9R2X6 Q9R2X6]
+
−
** [http://www.uniprot.org/uniprot/Q9R5F6 Q9R5F6]
+
−
** [http://www.uniprot.org/uniprot/Q9R5F5 Q9R5F5]
+
−
** [http://www.uniprot.org/uniprot/Q9R5F4 Q9R5F4]
+
−
** [http://www.uniprot.org/uniprot/P44391 P44391]
+
−
** [http://www.uniprot.org/uniprot/P44392 P44392]
+
−
** [http://www.uniprot.org/uniprot/P16124 P16124]
+
−
** [http://www.uniprot.org/uniprot/P16123 P16123]
+
−
** [http://www.uniprot.org/uniprot/P16122 P16122]
+
−
** [http://www.uniprot.org/uniprot/P17274 P17274]
+
−
** [http://www.uniprot.org/uniprot/P17273 P17273]
+
−
** [http://www.uniprot.org/uniprot/P17272 P17272]
+
−
** [http://www.uniprot.org/uniprot/P31496 P31496]
+
−
** [http://www.uniprot.org/uniprot/Q08715 Q08715]
+
−
** [http://www.uniprot.org/uniprot/P31494 P31494]
+
−
** [http://www.uniprot.org/uniprot/P42875 P42875]
+
−
** [http://www.uniprot.org/uniprot/P42874 P42874]
+
−
** [http://www.uniprot.org/uniprot/P42873 P42873]
+
−
** [http://www.uniprot.org/uniprot/Q9R5X1 Q9R5X1]
+
−
** [http://www.uniprot.org/uniprot/Q41214 Q41214]
+
−
** [http://www.uniprot.org/uniprot/P42887 P42887]
+
−
** [http://www.uniprot.org/uniprot/P42886 P42886]
+
−
** [http://www.uniprot.org/uniprot/P42885 P42885]
+
−
** [http://www.uniprot.org/uniprot/P41022 P41022]
+
−
** [http://www.uniprot.org/uniprot/P41021 P41021]
+
−
** [http://www.uniprot.org/uniprot/P41020 P41020]
+
−
** [http://www.uniprot.org/uniprot/P73796 P73796]
+
−
** [http://www.uniprot.org/uniprot/P73061 P73061]
+
−
** [http://www.uniprot.org/uniprot/P08298 P08298]
+
−
** [http://www.uniprot.org/uniprot/O86508 O86508]
+
−
** [http://www.uniprot.org/uniprot/O00084 O00084]
+
−
** [http://www.uniprot.org/uniprot/Q9RFF5 Q9RFF5]
+
−
** [http://www.uniprot.org/uniprot/Q9RFF4 Q9RFF4]
+
−
** [http://www.uniprot.org/uniprot/Q9RFF2 Q9RFF2]
+
−
** [http://www.uniprot.org/uniprot/P07374 P07374]
+
−
** [http://www.uniprot.org/uniprot/P14916 P14916]
+
−
** [http://www.uniprot.org/uniprot/P69996 P69996]
+
−
** [http://www.uniprot.org/uniprot/P69997 P69997]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=urease}}
+
−
{{#set: common name=urease_accessory_protein}}
+
−
{{#set: ec number=EC-3.5.1.5}}
+
−
{{#set: gene associated=Tiso_gene_3909|Tiso_gene_794}}
+
−
{{#set: in pathway=PWY-5704}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 01:15, 19 March 2018

Reaction RXN-16136

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (3S)-hydroxy-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c] + 1 NAD+[c] => 1 H+[c] + 1 NADH[c] + 1 3-oxo-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c]

Genes associated with this reaction

Pathways

  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1G-4355&oldid=29396"