Difference between revisions of "Tiso gene 15890"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-CoA dehydrogenase ** a...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/4.2.1...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** Acyl-CoA dehydrogenase
+
−
** acyl-_dehydrogenase
+
−
** acyl-CoA_dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.8 EC-1.3.8]
+
** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-15436]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[CPD0-1162]][c]
+
** 1 [[3-HYDROXYADIPYL-COA]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[TRANS-23-DEHYDROADIPYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (5Z)-tetradecenoyl-CoA[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 H+[c] '''=>''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 (2E,5Z)-tetradecenoyl-CoA[c]
+
** 1 (3S)-hydroxyadipyl-CoA[c] '''<=>''' 1 H2O[c] '''+''' 1 trans-2,3-dehydroadipyl-coA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16631]]
+
* [[Tiso_gene_5857]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
−
***AUTOMATED-NAME-MATCH
+
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_16113]]
+
* [[Tiso_gene_14257]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_8271]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_6475]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_5449]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_8272]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1361 PWY-1361]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY0-321]], phenylacetate degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-321 PWY0-321]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=Acyl-CoA dehydrogenase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34863 34863]
−
{{#set: common name=acyl-_dehydrogenase}}
+
* LIGAND-RXN:
−
{{#set: common name=acyl-CoA_dehydrogenase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R06942 R06942]
−
{{#set: ec number=EC-1.3.8}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: gene associated=Tiso_gene_16631|Tiso_gene_16113|Tiso_gene_8271|Tiso_gene_6475|Tiso_gene_5449|Tiso_gene_8272}}
+
{{#set: ec number=EC-4.2.1.17}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_5857|Tiso_gene_14257}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY-1361|PWY0-321}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 01:16, 19 March 2018

Reaction RXN-2425

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1361, benzoyl-CoA degradation I (aerobic): PWY-1361
    • 2 reactions found over 7 reactions in the full pathway
  • PWY0-321, phenylacetate degradation I (aerobic): PWY0-321
    • 2 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




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