Difference between revisions of "UDP-ARABINOSE-4-EPIMERASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBULOKINASE-RXN PHOSPHORIBULOKINASE-RXN] == * direction: ** REVERSIBLE * common name: ** ph...")
(Created page with "Category:Gene == Gene Tiso_gene_6231 == * left end position: ** 10075 * transcription direction: ** NEGATIVE * right end position: ** 12317 * centisome position: ** 81.112...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBULOKINASE-RXN PHOSPHORIBULOKINASE-RXN] ==
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== Gene Tiso_gene_6231 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 10075
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* common name:
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* transcription direction:
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** phosphoribulokinase
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.7.1.19 EC-2.7.1.19]
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** 12317
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* centisome position:
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** 81.11263   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[NICONUCADENYLYLTRAN-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
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** experimental_annotation
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* With common name(s):
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***automated-name-match
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** 1 ATP[c] '''+''' 1 D-ribulose 5-phosphate[c] '''<=>''' 1 D-ribulose-1,5-bisphosphate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
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== Pathways associated ==
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* [[PYRIDNUCSAL-PWY]]
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== Genes associated with this reaction  ==
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* [[PWY-5381]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PYRIDNUCSYN-PWY]]
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* [[Tiso_gene_17637]]
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* [[PWY-7761]]
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** IN-SILICO_ANNOTATION
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* [[PWY-5653]]
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways ==
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=10075}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19365 19365]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=12317}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523]
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{{#set: centisome position=81.11263    }}
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* UNIPROT:
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{{#set: reaction associated=NICONUCADENYLYLTRAN-RXN}}
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** [http://www.uniprot.org/uniprot/P23010 P23010]
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{{#set: pathway associated=PYRIDNUCSAL-PWY|PWY-5381|PYRIDNUCSYN-PWY|PWY-7761|PWY-5653}}
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** [http://www.uniprot.org/uniprot/P0AEX5 P0AEX5]
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** [http://www.uniprot.org/uniprot/P19923 P19923]
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** [http://www.uniprot.org/uniprot/P19924 P19924]
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** [http://www.uniprot.org/uniprot/P23015 P23015]
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** [http://www.uniprot.org/uniprot/P12033 P12033]
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** [http://www.uniprot.org/uniprot/Q8GRU9 Q8GRU9]
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** [http://www.uniprot.org/uniprot/P09559 P09559]
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** [http://www.uniprot.org/uniprot/P25697 P25697]
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** [http://www.uniprot.org/uniprot/P93681 P93681]
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** [http://www.uniprot.org/uniprot/P19824 P19824]
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** [http://www.uniprot.org/uniprot/P27774 P27774]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=phosphoribulokinase}}
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{{#set: ec number=EC-2.7.1.19}}
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{{#set: gene associated=Tiso_gene_17637}}
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{{#set: in pathway=CALVIN-PWY|PWY-5723}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 00:17, 19 March 2018

Gene Tiso_gene_6231

  • left end position:
    • 10075
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 12317
  • centisome position:
    • 81.11263
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=UDP-ARABINOSE-4-EPIMERASE-RXN&oldid=29556"