Difference between revisions of "RXN0-383"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DAHPSYN-RXN DAHPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** phospho-2-dehydro-3-deoxyh...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxidas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DAHPSYN-RXN DAHPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phospho-2-dehydro-3-deoxyheptonate_phe-sensitive
+
** coproporphyrinogen-iii_oxidase
−
** 3-deoxy-7-phosphoheptulonate_synthase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.54 EC-2.5.1.54]
+
** [http://enzyme.expasy.org/EC/1.3.98.3 EC-1.3.98.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ERYTHROSE-4P]][c] '''<=>''' 1 [[3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[MET]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[CH33ADO]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 phosphoenolpyruvate[c] '''+''' 1 H2O[c] '''+''' 1 D-erythrose 4-phosphate[c] '''<=>''' 1 3-deoxy-D-arabino-heptulosonate 7-phosphate[c] '''+''' 1 phosphate[c]
+
** 1 coproporphyrinogen III[c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 2 L-methionine[c] '''+''' 2 CO2[c] '''+''' 1 protoporphyrinogen IX[c] '''+''' 2 5'-deoxyadenosine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8934]]
+
* [[Tiso_gene_18066]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13365]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_7372]]
+
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5577]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13364]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
 
−
* [[Tiso_gene_8935]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_18937]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_18975]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
 
***EC-NUMBER
 
***EC-NUMBER
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_4004]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6164]], 3-dehydroquinate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6164 PWY-6164]
+
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
** Source: [[orthology-synechocystis]]
−
*** [[athaliana]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[primary_network]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14717 14717]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15425 15425]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01826 R01826]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
−
* UNIPROT:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P0A1B5 P0A1B5]
+
{{#set: common name=coproporphyrinogen-iii_oxidase}}
−
** [http://www.uniprot.org/uniprot/Q9JSQ8 Q9JSQ8]
+
{{#set: ec number=EC-1.3.98.3}}
−
** [http://www.uniprot.org/uniprot/P00887 P00887]
+
{{#set: gene associated=Tiso_gene_18066|Tiso_gene_13365|Tiso_gene_5577|Tiso_gene_13364|Tiso_gene_4004}}
−
** [http://www.uniprot.org/uniprot/P0AB91 P0AB91]
+
{{#set: in pathway=PWY-5531|HEMESYN2-PWY}}
−
** [http://www.uniprot.org/uniprot/P00888 P00888]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q9PPJ1 Q9PPJ1]
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/P46245 P46245]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P35170 P35170]
+
−
** [http://www.uniprot.org/uniprot/P44303 P44303]
+
−
** [http://www.uniprot.org/uniprot/P34725 P34725]
+
−
** [http://www.uniprot.org/uniprot/P39912 P39912]
+
−
** [http://www.uniprot.org/uniprot/P14843 P14843]
+
−
** [http://www.uniprot.org/uniprot/Q02285 Q02285]
+
−
** [http://www.uniprot.org/uniprot/P32449 P32449]
+
−
** [http://www.uniprot.org/uniprot/P37215 P37215]
+
−
** [http://www.uniprot.org/uniprot/P37216 P37216]
+
−
** [http://www.uniprot.org/uniprot/Q09755 Q09755]
+
−
** [http://www.uniprot.org/uniprot/Q00218 Q00218]
+
−
** [http://www.uniprot.org/uniprot/P29976 P29976]
+
−
** [http://www.uniprot.org/uniprot/Q42921 Q42921]
+
−
** [http://www.uniprot.org/uniprot/O22407 O22407]
+
−
** [http://www.uniprot.org/uniprot/O52798 O52798]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=phospho-2-dehydro-3-deoxyheptonate_phe-sensitive}}
+
−
{{#set: common name=3-deoxy-7-phosphoheptulonate_synthase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-2.5.1.54}}
+
−
{{#set: gene associated=Tiso_gene_8934|Tiso_gene_7372|Tiso_gene_8935|Tiso_gene_18937|Tiso_gene_18975}}
+
−
{{#set: in pathway=PWY-6164}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 01:17, 19 March 2018

Reaction HEMN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • coproporphyrinogen-iii_oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway
  • HEMESYN2-PWY, heme biosynthesis II (anaerobic): HEMESYN2-PWY
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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