Difference between revisions of "Cis-cis-D7-19-3-hydroxyC38-2-ACPs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] == * direction: ** REVERSIBL...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14393 RXN-14393] == * direction: ** LEFT-TO-RIGHT * common name: ** Long chain 3-hydroxyacyl-Co...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14393 RXN-14393] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** branched-chain_amino_acid_aminotransferase
+
** Long chain 3-hydroxyacyl-CoA dehydrogenase (Peroxisomal)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
+
** [http://enzyme.expasy.org/EC/1.1.1.211 EC-1.1.1.211]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[VAL]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c]
+
** 1 [[CPD0-1163]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-15244]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-valine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-methyl-2-oxobutanoate[c]
+
** 1 (S)-3-hydroxy-(5Z)-tetradecenoyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 3-oxo-(5Z)-tetradecenoyl-CoA[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18403]]
+
* Gene: [[Tiso_gene_14262]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_14984]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=ALANINE-VALINESYN-PWY ALANINE-VALINESYN-PWY]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5057]], L-valine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5057 PWY-5057]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24813 24813]
+
{{#set: common name=Long chain 3-hydroxyacyl-CoA dehydrogenase (Peroxisomal)}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-1.1.1.211}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
+
{{#set: gene associated=Tiso_gene_14262}}
−
* UNIPROT:
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P38891 P38891]
+
{{#set: reconstruction source=annotation-experimental_annotation}}
−
** [http://www.uniprot.org/uniprot/P47176 P47176]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/O86505 O86505]
+
−
** [http://www.uniprot.org/uniprot/O14370 O14370]
+
−
** [http://www.uniprot.org/uniprot/O32954 O32954]
+
−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=branched-chain_amino_acid_aminotransferase}}
+
−
{{#set: ec number=EC-2.6.1.42}}
+
−
{{#set: gene associated=Tiso_gene_18403|Tiso_gene_14984}}
+
−
{{#set: in pathway=VALSYN-PWY|VALDEG-PWY|ALANINE-VALINESYN-PWY|PWY-5057}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:44, 21 March 2018

Reaction RXN-14393

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Long chain 3-hydroxyacyl-CoA dehydrogenase (Peroxisomal)
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-3-hydroxy-(5Z)-tetradecenoyl-CoA[c] + 1 NAD+[c] => 1 H+[c] + 1 3-oxo-(5Z)-tetradecenoyl-CoA[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

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