Difference between revisions of "CPD-7139"

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(Created page with "Category:Gene == Gene Tiso_gene_11866 == * left end position: ** 1685 * transcription direction: ** NEGATIVE * right end position: ** 4128 * centisome position: ** 22.5689...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16540 RXN-16540] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase **...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_11866 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16540 RXN-16540] ==
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* left end position:
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* direction:
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** 1685
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** acyl-coenzyme_a_oxidase
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* right end position:
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** ORF
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** 4128
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** acyl-_dehydrogenase
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* centisome position:
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** acyl-CoA_dehydrogenase
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** 22.56898   
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.8.9 EC-1.3.8.9]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-8988]]
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* With identifiers:
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** [[pantograph]]-[[esiliculosus]]
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** 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[PALMITYL-COA]][c] '''=>''' 1 [[CPD0-2117]][c] '''+''' 1 [[ETF-Reduced]][c]
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* [[SUCCCOASYN-RXN]]
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* With common name(s):
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** in-silico_annotation
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** 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 palmitoyl-CoA[c] '''=>''' 1 trans-hexadec-2-enoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
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***ec-number
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** experimental_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[athaliana]]
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* Gene: [[Tiso_gene_6475]]
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** [[pantograph]]-[[synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_5991]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[SUCL_gdp_m]]
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* Gene: [[Tiso_gene_16631]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[PWY-5913]]
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* Gene: [[Tiso_gene_18566]]
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* [[P42-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-7384]]
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*** Assignment: EC-NUMBER
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* [[PWY-5392]]
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* Gene: [[Tiso_gene_883]]
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* [[P23-PWY]]
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-5690]]
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*** Assignment: EC-NUMBER
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* [[PWY-6969]]
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* Gene: [[Tiso_gene_17967]]
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* [[PWY-6728]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-5749]]
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*** Assignment: EC-NUMBER
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* [[PWY-5538]]
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== Pathways ==
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* [[TCA]]
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* [[PWY-7654]], (8E,10E)-dodeca-8,10-dienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654]
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* [[PWY66-398]]
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** '''6''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5537]]
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* [[PWY-7656]], Spodoptera littoralis pheromone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7656 PWY-7656]
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** '''6''' reactions found over '''22''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1685}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=acyl-coenzyme_a_oxidase}}
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{{#set: right end position=4128}}
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{{#set: common name=ORF}}
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{{#set: centisome position=22.56898    }}
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{{#set: common name=acyl-_dehydrogenase}}
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{{#set: reaction associated=RXN-8988|SUCCCOASYN-RXN|SUCCINATE--COA-LIGASE-GDP-FORMING-RXN|SUCL_gdp_m}}
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{{#set: common name=acyl-CoA_dehydrogenase}}
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{{#set: pathway associated=PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|PWY-5690|PWY-6969|PWY-6728|PWY-5749|PWY-5538|TCA|PWY66-398|PWY-5537}}
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{{#set: ec number=EC-1.3.8.9}}
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{{#set: gene associated=Tiso_gene_6475|Tiso_gene_5991|Tiso_gene_16631|Tiso_gene_18566|Tiso_gene_883|Tiso_gene_17967}}
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{{#set: in pathway=PWY-7654|PWY-7656}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:46, 21 March 2018

Reaction RXN-16540

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-coenzyme_a_oxidase
    • ORF
    • acyl-_dehydrogenase
    • acyl-CoA_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 an oxidized electron-transfer flavoprotein[c] + 1 palmitoyl-CoA[c] => 1 trans-hexadec-2-enoyl-CoA[c] + 1 a reduced electron-transfer flavoprotein[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7654, (8E,10E)-dodeca-8,10-dienol biosynthesis: PWY-7654
    • 6 reactions found over 11 reactions in the full pathway
  • PWY-7656, Spodoptera littoralis pheromone biosynthesis: PWY-7656
    • 6 reactions found over 22 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-7139&oldid=30120"