Difference between revisions of "GLYCOCAT-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] == * direction: ** LEFT-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** cryptochrome_photolyase_fad-binding_domain-containing_protein
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** [2Fe-2S] iron-sulfur cluster biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.99.3 EC-4.1.99.3]
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* Synonym(s):
 
* Synonym(s):
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** [Fe-S] cluster biosynthesis
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** [2Fe-2S] cluster biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''10''' reactions in the full pathway
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** 1 [[DNA-With-Pyrimidine-Dimers]][c] '''=>''' 1 [[DNA-Adjacent-Pyrimidines]][c]
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* [[RXN-14381]]
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* With common name(s):
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** 0 associated gene:
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**
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_15524]]
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* [[RXN-14384]]
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** [[pantograph]]-[[esiliculosus]]
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** 3 associated gene(s):
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* [[Tiso_gene_6546]]
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*** [[Tiso_gene_11478]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_14710]]
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***EC-NUMBER
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*** [[Tiso_gene_4284]]
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* [[Tiso_gene_6547]]
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** 3 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_15196]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14385]]
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* [[Tiso_gene_15525]]
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** 3 associated gene(s):
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_11478]]
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* [[Tiso_gene_16321]]
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*** [[Tiso_gene_4284]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_14710]]
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* [[Tiso_gene_6548]]
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** 3 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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* [[RXN-14386]]
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* Category: [[orthology]]
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** 3 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_11478]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_14710]]
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* Category: [[annotation]]
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*** [[Tiso_gene_4284]]
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** Source: [[annotation-in-silico_annotation]]
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** 3 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-14387]]
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** 1 associated gene(s):
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*** [[Tiso_gene_15502]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-14388]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-14389]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-14390]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-14391]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-15881]]
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** 3 associated gene(s):
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*** [[Tiso_gene_11478]]
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*** [[Tiso_gene_14710]]
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*** [[Tiso_gene_4284]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00034 R00034]
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{{#set: taxonomic range=TAX-2}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/P12769 P12769]
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{{#set: common name=[2Fe-2S] iron-sulfur cluster biosynthesis}}
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** [http://www.uniprot.org/uniprot/Q9JSP8 Q9JSP8]
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{{#set: common name=[Fe-S] cluster biosynthesis|[2Fe-2S] cluster biosynthesis}}
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** [http://www.uniprot.org/uniprot/Q9HQ46 Q9HQ46]
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{{#set: reaction found=10}}
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** [http://www.uniprot.org/uniprot/P12768 P12768]
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{{#set: total reaction=10}}
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** [http://www.uniprot.org/uniprot/P27526 P27526]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P25078 P25078]
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** [http://www.uniprot.org/uniprot/Q43125 Q43125]
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** [http://www.uniprot.org/uniprot/P40115 P40115]
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** [http://www.uniprot.org/uniprot/Q28811 Q28811]
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** [http://www.uniprot.org/uniprot/Q24443 Q24443]
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** [http://www.uniprot.org/uniprot/Q91186 Q91186]
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** [http://www.uniprot.org/uniprot/Q42696 Q42696]
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** [http://www.uniprot.org/uniprot/P05066 P05066]
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** [http://www.uniprot.org/uniprot/O24020 O24020]
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** [http://www.uniprot.org/uniprot/O24374 O24374]
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** [http://www.uniprot.org/uniprot/P00914 P00914]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=cryptochrome_photolyase_fad-binding_domain-containing_protein}}
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{{#set: ec number=EC-4.1.99.3}}
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−
{{#set: gene associated=Tiso_gene_15524|Tiso_gene_6546|Tiso_gene_6547|Tiso_gene_15196|Tiso_gene_15525|Tiso_gene_16321|Tiso_gene_6548}}
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−
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:48, 21 March 2018

Pathway PWY-7250

  • taxonomic range:
  • common name:
    • [2Fe-2S] iron-sulfur cluster biosynthesis
  • Synonym(s):
    • [Fe-S] cluster biosynthesis
    • [2Fe-2S] cluster biosynthesis

Reaction(s) found

10 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

"2Fe-2S] iron-sulfur cluster biosynthesis" cannot be used as a page name in this wiki.
  • "Fe-S] cluster biosynthesis" cannot be used as a page name in this wiki.
  • "2Fe-2S] cluster biosynthesis" cannot be used as a page name in this wiki.


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