Difference between revisions of "Tiso gene 7315"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYLHOMOSER-CYS-RXN ACETYLHOMOSER-CYS-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] == * direction: ** LEFT-...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYLHOMOSER-CYS-RXN ACETYLHOMOSER-CYS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** cryptochrome_photolyase_fad-binding_domain-containing_protein
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.49 EC-2.5.1.49]
+
** [http://enzyme.expasy.org/EC/4.1.99.3 EC-4.1.99.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-667]][c] '''+''' 1 [[HS]][c] '''<=>''' 1 [[HOMO-CYS]][c] '''+''' 1 [[ACET]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[DNA-With-Pyrimidine-Dimers]][c] '''=>''' 1 [[DNA-Adjacent-Pyrimidines]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 O-acetyl-L-homoserine[c] '''+''' 1 hydrogen sulfide[c] '''<=>''' 1 L-homocysteine[c] '''+''' 1 acetate[c] '''+''' 1 H+[c]
+
**
−
 
+
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3732]]
+
* Gene: [[Tiso_gene_15524]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6546]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6547]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15525]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16321]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15196]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6548]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5344]], L-homocysteine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5344 PWY-5344]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27822 27822]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01287 R01287]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00034 R00034]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: ec number=EC-2.5.1.49}}
+
** [http://www.uniprot.org/uniprot/P12769 P12769]
−
{{#set: gene associated=Tiso_gene_3732}}
+
** [http://www.uniprot.org/uniprot/Q9JSP8 Q9JSP8]
−
{{#set: in pathway=PWY-5344}}
+
** [http://www.uniprot.org/uniprot/Q9HQ46 Q9HQ46]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P12768 P12768]
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
** [http://www.uniprot.org/uniprot/P27526 P27526]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P25078 P25078]
 +
** [http://www.uniprot.org/uniprot/Q43125 Q43125]
 +
** [http://www.uniprot.org/uniprot/P40115 P40115]
 +
** [http://www.uniprot.org/uniprot/Q28811 Q28811]
 +
** [http://www.uniprot.org/uniprot/Q24443 Q24443]
 +
** [http://www.uniprot.org/uniprot/Q91186 Q91186]
 +
** [http://www.uniprot.org/uniprot/Q42696 Q42696]
 +
** [http://www.uniprot.org/uniprot/P05066 P05066]
 +
** [http://www.uniprot.org/uniprot/O24020 O24020]
 +
** [http://www.uniprot.org/uniprot/O24374 O24374]
 +
** [http://www.uniprot.org/uniprot/P00914 P00914]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=cryptochrome_photolyase_fad-binding_domain-containing_protein}}
 +
{{#set: ec number=EC-4.1.99.3}}
 +
{{#set: gene associated=Tiso_gene_15524|Tiso_gene_6546|Tiso_gene_6547|Tiso_gene_15525|Tiso_gene_16321|Tiso_gene_15196|Tiso_gene_6548}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:48, 21 March 2018

Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • cryptochrome_photolyase_fad-binding_domain-containing_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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