Difference between revisions of "Heparan-sulfate-L-iduronate"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** udp-glucose_4-epim...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Heparan-sulfate-L-iduronate Heparan-sulfate-L-iduronate] == * common name: ** a [heparan sulfat...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Heparan-sulfate-L-iduronate Heparan-sulfate-L-iduronate] ==
−
* direction:
+
−
** REVERSIBLE
+
 
* common name:
 
* common name:
−
** udp-glucose_4-epimerase_5
+
** a [heparan sulfate]-α-L-iduronate
−
** udp-glucose_4-epimerase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/5.1.3.2 EC-5.1.3.2]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
== Reaction(s) known to produce the compound ==
−
** 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
+
* [[3.1.6.13-RXN]]
−
* With common name(s):
+
== Reaction(s) of unknown directionality ==
−
** 1 UDP-&alpha;-D-glucose[c] '''<=>''' 1 UDP-&alpha;-D-galactose[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_9823]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3236]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15395]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_10797]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PWY-7344]], UDP-D-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
+
−
** '''2''' reactions found over '''17''' reactions in the full pathway
+
−
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
+
−
** '''5''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
+
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
+
−
** '''5''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common name=a [heparan sulfate]-&alpha;-L-iduronate}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22168 22168]
+
{{#set: produced by=3.1.6.13-RXN}}
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P35673 P35673]
+
−
** [http://www.uniprot.org/uniprot/P22715 P22715]
+
−
** [http://www.uniprot.org/uniprot/P21977 P21977]
+
−
** [http://www.uniprot.org/uniprot/P24325 P24325]
+
−
** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
+
−
** [http://www.uniprot.org/uniprot/Q57664 Q57664]
+
−
** [http://www.uniprot.org/uniprot/P55180 P55180]
+
−
** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
+
−
** [http://www.uniprot.org/uniprot/P56997 P56997]
+
−
** [http://www.uniprot.org/uniprot/Q59083 Q59083]
+
−
** [http://www.uniprot.org/uniprot/Q44016 Q44016]
+
−
** [http://www.uniprot.org/uniprot/Q45291 Q45291]
+
−
** [http://www.uniprot.org/uniprot/P96995 P96995]
+
−
** [http://www.uniprot.org/uniprot/P45602 P45602]
+
−
** [http://www.uniprot.org/uniprot/P18645 P18645]
+
−
** [http://www.uniprot.org/uniprot/P26503 P26503]
+
−
** [http://www.uniprot.org/uniprot/P40801 P40801]
+
−
** [http://www.uniprot.org/uniprot/Q05026 Q05026]
+
−
** [http://www.uniprot.org/uniprot/P56985 P56985]
+
−
** [http://www.uniprot.org/uniprot/Q51148 Q51148]
+
−
** [http://www.uniprot.org/uniprot/Q56093 Q56093]
+
−
** [http://www.uniprot.org/uniprot/Q42605 Q42605]
+
−
** [http://www.uniprot.org/uniprot/Q60109 Q60109]
+
−
** [http://www.uniprot.org/uniprot/P72903 P72903]
+
−
** [http://www.uniprot.org/uniprot/P72915 P72915]
+
−
** [http://www.uniprot.org/uniprot/O66256 O66256]
+
−
** [http://www.uniprot.org/uniprot/O64749 O64749]
+
−
** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
+
−
** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
+
−
** [http://www.uniprot.org/uniprot/Q43070 Q43070]
+
−
** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
+
−
** [http://www.uniprot.org/uniprot/O65780 O65780]
+
−
** [http://www.uniprot.org/uniprot/O65781 O65781]
+
−
** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
+
−
** [http://www.uniprot.org/uniprot/P04397 P04397]
+
−
** [http://www.uniprot.org/uniprot/P09147 P09147]
+
−
** [http://www.uniprot.org/uniprot/P13226 P13226]
+
−
** [http://www.uniprot.org/uniprot/P09609 P09609]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=udp-glucose_4-epimerase_5}}
+
−
{{#set: common name=udp-glucose_4-epimerase}}
+
−
{{#set: ec number=EC-5.1.3.2}}
+
−
{{#set: gene associated=Tiso_gene_9823|Tiso_gene_3236|Tiso_gene_15395|Tiso_gene_10797}}
+
−
{{#set: in pathway=PWY-7344|PWY-6397|COLANSYN-PWY|PWY-6527|PWY-7328|PWY-6317|PWY66-422|PWY-3821}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 14:49, 21 March 2018

Metabolite Heparan-sulfate-L-iduronate

  • common name:
    • a [heparan sulfate]-α-L-iduronate
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"a [heparan sulfate]-&alpha;-L-iduronate" cannot be used as a page name in this wiki.
Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Heparan-sulfate-L-iduronate&oldid=30409"