Difference between revisions of "Reduced-2Fe-2S-Ferredoxins"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6313 PWY-6313] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7908 RXN-7908] == * direction: ** LEFT-TO-RIGHT * common name: ** transcriptional_coactivator_p...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6313 PWY-6313] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7908 RXN-7908] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** serotonin degradation
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** transcriptional_coactivator_pterin_dehydratase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.96 EC-4.2.1.96]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[RXN-10777]]
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** 1 [[CPD-5881]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[BIOPTERIN]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_5505]]
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** 1 4α-hydroxy-tetrahydrobiopterin[c] '''=>''' 1 H2O[c] '''+''' 1 7,8-dihydrobiopterin[c]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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* [[RXN-10779]]
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Genes have been associated with this reaction based on different elements listed below.
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** 0 associated gene:
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* Gene: [[Tiso_gene_14844]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* [[RXN-10780]]
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* Gene: [[Tiso_gene_14845]]
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** 2 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_7322]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_3513]]
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[orthology-athaliana]]
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* [[PHENYLALANINE-DEG1-PWY]], L-phenylalanine degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-DEG1-PWY PHENYLALANINE-DEG1-PWY]
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*** [[orthology-esiliculosus]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[RXN-10781]]
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== Reconstruction information  ==
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** 5 associated gene(s):
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* Category: [[orthology]]
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*** [[Tiso_gene_6562]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_7649]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_5424]]
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* Category: [[annotation]]
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*** [[Tiso_gene_5425]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6563]]
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*** Tool: [[pathwaytools]]
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** 1 reconstruction source(s) associated:
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−
*** [[annotation-in-silico_annotation]]
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−
* [[RXN-10782]]
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−
** 1 associated gene(s):
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−
*** [[Tiso_gene_5505]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[orthology-esiliculosus]]
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−
* [[RXN-10784]]
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** 2 associated gene(s):
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−
*** [[Tiso_gene_14141]]
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*** [[Tiso_gene_14140]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10778 RXN-10778]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33208}}
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* RHEA:
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{{#set: common name=serotonin degradation}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11920 11920]
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{{#set: reaction found=6}}
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* LIGAND-RXN:
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{{#set: total reaction=7}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04734 R04734]
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{{#set: completion rate=86.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=transcriptional_coactivator_pterin_dehydratase}}
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{{#set: ec number=EC-4.2.1.96}}
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{{#set: gene associated=Tiso_gene_14844|Tiso_gene_14845}}
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{{#set: in pathway=PHENYLALANINE-DEG1-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:49, 21 March 2018

Reaction RXN-7908

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • transcriptional_coactivator_pterin_dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 4α-hydroxy-tetrahydrobiopterin[c] => 1 H2O[c] + 1 7,8-dihydrobiopterin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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