Difference between revisions of "PWY-5451"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=S-ADENOSYLMETHIONINE S-ADENOSYLMETHIONINE] == * smiles: ** C[S+](CC3(C(O)C(O)C(N2(C1(N=CN=C(N)C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5424 RXN-5424] == * direction: ** LEFT-TO-RIGHT * common name: ** indole-3-glycol dehydrogenase...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=S-ADENOSYLMETHIONINE S-ADENOSYLMETHIONINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5424 RXN-5424] ==
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* smiles:
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* direction:
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** C[S+](CC3(C(O)C(O)C(N2(C1(N=CN=C(N)C=1N=C2)))O3))CCC(C([O-])=O)[N+]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=MEFKEPWMEQBLKI-AIRLBKTGSA-O
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* common name:
 
* common name:
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** S-adenosyl-L-methionine
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** indole-3-glycol dehydrogenase
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* molecular weight:
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** polyketide_synthase
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** 399.444   
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
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** AdoMet
 
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** SAM
 
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** 2-S-adenosyl-L-methionine
 
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** S-adenosyl-methionine
 
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** adenosylmethionine
 
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** S-adenosylmethionine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN0-5063]]
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* With identifiers:
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* [[RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN]]
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** 1 [[PROTON]][c] '''+''' 1 [[3-INDOLYLGLYCOLALDEHYDE]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[INDOLE-3-GLYCOL]][c] '''+''' 1 [[NAD]][c]
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* [[RXN-14177]]
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* With common name(s):
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* [[RXN-14950]]
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** 1 H+[c] '''+''' 1 indole-3-glycol aldehyde[c] '''+''' 1 NADH[c] '''=>''' 1 indole-3-glycol[c] '''+''' 1 NAD+[c]
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* [[RXN0-949]]
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* [[NICOTINAMIDE-N-METHYLTRANSFERASE-RXN]]
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== Genes associated with this reaction  ==
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* [[2.1.1.137-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-8340]]
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* Gene: [[Tiso_gene_6562]]
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* [[RXN-1104]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-2762]]
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*** Assignment: EC-NUMBER
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* [[2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN]]
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* Gene: [[Tiso_gene_6563]]
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* [[HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-14480]]
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*** Assignment: EC-NUMBER
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* [[RXN-1143]]
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* Gene: [[Tiso_gene_7649]]
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* [[QUERCETIN-3-O-METHYLTRANSFERASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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* [[2.8.1.6-RXN]]
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*** Assignment: EC-NUMBER
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* [[2.1.1.109-RXN]]
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* Gene: [[Tiso_gene_5424]]
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* [[UROPORIIIMETHYLTRANSA-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-10847]]
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*** Assignment: EC-NUMBER
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* [[2-OCTAPRENYL-6-OHPHENOL-METHY-RXN]]
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* Gene: [[Tiso_gene_5425]]
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* [[RXN-12375]]
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** Source: [[annotation-in-silico_annotation]]
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* [[DHHB-METHYLTRANSFER-RXN]]
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*** Assignment: EC-NUMBER
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* [[HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN]]
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== Pathways  ==
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* [[RXN-14957]]
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* [[PWY-3162]], L-tryptophan degradation V (side chain pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3162 PWY-3162]
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* [[RXN-14959]]
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** '''2''' reactions found over '''13''' reactions in the full pathway
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* [[TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN]]
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== Reconstruction information  ==
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* [[RXN-11046]]
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* Category: [[annotation]]
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* [[RXN1G-2544]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-2542]]
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*** Tool: [[pathwaytools]]
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* [[RXN-11374]]
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* [[HEMN-RXN]]
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* [[RXN-11373]]
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* [[RXN-11370]]
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* [[RXN-13403]]
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* [[MRNA-GUANINE-N7--METHYLTRANSFERASE-RXN]]
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* [[RXN-9500]]
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* [[RXN-13406]]
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* [[TOCOPHEROL-O-METHYLTRANSFERASE-RXN]]
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* [[RXN1G-3641]]
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* [[RXN-3422]]
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* [[RXN-12377]]
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* [[2.1.1.138-RXN]]
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* [[2.1.1.113-RXN]]
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* [[SAMDECARB-RXN]]
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* [[RXN-12376]]
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* [[2.1.1.143-RXN]]
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* [[TRNA-URACIL-5--METHYLTRANSFERASE-RXN]]
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* [[RXN-7605]]
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* [[RXN-17473]]
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* [[RXN-17472]]
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* [[RXN-13935]]
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* [[RXN0-5144]]
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* [[RXN-14326]]
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* [[RXN0-1342]]
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* [[DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN]]
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* [[RXN-8675]]
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* [[RXN-2562]]
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* [[RXN0-6515]]
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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* [[2.1.1.127-RXN]]
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* [[RXN0-5419]]
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* [[RXN-4021]]
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* [[R06859]]
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* [[RXN-12347]]
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* [[RXN-12459]]
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* [[RXN-9235]]
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* [[RXN-11856]]
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* [[RXN-12348]]
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* [[2.1.1.77-RXN]]
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* [[2.1.1.79-RXN]]
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* [[RXN-11637]]
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* [[RXN-14481]]
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* [[AMCL]]
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* [[RXN-11633]]
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* [[4.4.1.14-RXN]]
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* [[RXN-11201]]
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* [[RXN-11574]]
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* [[RXN-11598]]
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* [[RXN-13588]]
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* [[RXN-14917]]
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* [[RXN-11638]]
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== Reaction(s) known to produce the compound ==
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* [[S-ADENMETSYN-RXN]]
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== Reaction(s) of unknown directionality ==
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* [[AMETt2h]]
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* [[DAPASYN-RXN]]
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* [[AMETt2m]]
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== External links  ==
 
== External links  ==
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* CAS : 29908-03-0
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{{#set: direction=LEFT-TO-RIGHT}}
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* METABOLIGHTS : MTBLC59789
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{{#set: common name=indole-3-glycol dehydrogenase}}
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* PUBCHEM:
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{{#set: common name=polyketide_synthase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=24762165 24762165]
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{{#set: common name=ORF}}
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* HMDB : HMDB01185
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{{#set: ec number=EC-1.1.1.1}}
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* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_6562|Tiso_gene_6563|Tiso_gene_7649|Tiso_gene_5424|Tiso_gene_5425}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00019 C00019]
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{{#set: in pathway=PWY-3162}}
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* CHEBI:
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{{#set: reconstruction category=annotation}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=59789 59789]
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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* BIGG : amet
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: smiles=C[S+](CC3(C(O)C(O)C(N2(C1(N=CN=C(N)C=1N=C2)))O3))CCC(C([O-])=O)[N+]}}
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{{#set: inchi key=InChIKey=MEFKEPWMEQBLKI-AIRLBKTGSA-O}}
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{{#set: common name=S-adenosyl-L-methionine}}
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{{#set: molecular weight=399.444    }}
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{{#set: common name=AdoMet|SAM|2-S-adenosyl-L-methionine|S-adenosyl-methionine|adenosylmethionine|S-adenosylmethionine}}
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{{#set: consumed by=RXN0-5063|RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN|RXN-14177|RXN-14950|RXN0-949|NICOTINAMIDE-N-METHYLTRANSFERASE-RXN|2.1.1.137-RXN|RXN-8340|RXN-1104|RXN-2762|2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN|HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN|RXN-14480|RXN-1143|QUERCETIN-3-O-METHYLTRANSFERASE-RXN|2.8.1.6-RXN|2.1.1.109-RXN|UROPORIIIMETHYLTRANSA-RXN|RXN-10847|2-OCTAPRENYL-6-OHPHENOL-METHY-RXN|RXN-12375|DHHB-METHYLTRANSFER-RXN|HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN|RXN-14957|RXN-14959|TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN|RXN-11046|RXN1G-2544|RXN-2542|RXN-11374|HEMN-RXN|RXN-11373|RXN-11370|RXN-13403|MRNA-GUANINE-N7--METHYLTRANSFERASE-RXN|RXN-9500|RXN-13406|TOCOPHEROL-O-METHYLTRANSFERASE-RXN|RXN1G-3641|RXN-3422|RXN-12377|2.1.1.138-RXN|2.1.1.113-RXN|SAMDECARB-RXN|RXN-12376|2.1.1.143-RXN|TRNA-URACIL-5--METHYLTRANSFERASE-RXN|RXN-7605|RXN-17473|RXN-17472|RXN-13935|RXN0-5144|RXN-14326|RXN0-1342|DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN|RXN-8675|RXN-2562|RXN0-6515|CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN|2.1.1.127-RXN|RXN0-5419|RXN-4021|R06859|RXN-12347|RXN-12459|RXN-9235|RXN-11856|RXN-12348|2.1.1.77-RXN|2.1.1.79-RXN|RXN-11637|RXN-14481|AMCL|RXN-11633|4.4.1.14-RXN|RXN-11201|RXN-11574|RXN-11598|RXN-13588|RXN-14917|RXN-11638}}
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{{#set: produced by=S-ADENMETSYN-RXN}}
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{{#set: reversible reaction associated=AMETt2h|DAPASYN-RXN|AMETt2m}}
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Revision as of 14:50, 21 March 2018

Reaction RXN-5424

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • indole-3-glycol dehydrogenase
    • polyketide_synthase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3162, L-tryptophan degradation V (side chain pathway): PWY-3162
    • 2 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5451&oldid=30607"