Difference between revisions of "RXN-14213"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-330...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.6.14-RXN 3.1.6.14-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** n-acetylglucosamine-6...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.6.14-RXN 3.1.6.14-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** flavin biosynthesis I (bacteria and plants)
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** n-acetylglucosamine-6-sulfatase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.6.14 EC-3.1.6.14]
 
* Synonym(s):
 
* Synonym(s):
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** riboflavin, FMN and FAD biosynthesis
 
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** vitamin B2 biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''7''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[DIOHBUTANONEPSYN-RXN]]
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** 1 [[Heparan-NAc-Glc-6S]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Heparan-NAc-Glc]][c] '''+''' 1 [[SULFATE]][c] '''+''' 1 [[PROTON]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14275]]
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** 1 [heparan sulfate]-α-N-acetyl-D-glucosamine 6-O-sulfate[c] '''+''' 1 H2O[c] '''=>''' 1 a [heparan]-N-acetyl-α-D-glucosamine[c] '''+''' 1 sulfate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_19932]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18170]]
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* [[FADSYN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 4 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_5393]]
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== Pathways  ==
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*** [[Tiso_gene_5392]]
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== Reconstruction information  ==
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*** [[Tiso_gene_7479]]
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* Category: [[annotation]]
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*** [[Tiso_gene_1086]]
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** Source: [[annotation-in-silico_annotation]]
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** 4 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[GTP-CYCLOHYDRO-II-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_14275]]
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*** [[Tiso_gene_19932]]
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*** [[Tiso_gene_8035]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RIBOFLAVIN-SYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13686]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RIBOFLAVINKIN-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_7479]]
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*** [[Tiso_gene_1086]]
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*** [[Tiso_gene_16837]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RIBOFLAVINSYNDEAM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_1389]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RIBOFLAVINSYNREDUC-RXN]]
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** 2 associated gene(s):
+
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*** [[Tiso_gene_8035]]
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−
*** [[Tiso_gene_1389]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=LUMAZINESYN-RXN LUMAZINESYN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RIBOPHOSPHAT-RXN RIBOPHOSPHAT-RXN]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* UNIPROT:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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** [http://www.uniprot.org/uniprot/P15586 P15586]
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* ARACYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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{{#set: common name=n-acetylglucosamine-6-sulfatase}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: ec number=EC-3.1.6.14}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: gene associated=Tiso_gene_18170}}
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{{#set: common name=flavin biosynthesis I (bacteria and plants)}}
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{{#set: in pathway=}}
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{{#set: common name=riboflavin, FMN and FAD biosynthesis|vitamin B2 biosynthesis}}
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{{#set: reconstruction category=annotation}}
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{{#set: reaction found=7}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: total reaction=9}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: completion rate=78.0}}
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Revision as of 14:51, 21 March 2018

Reaction 3.1.6.14-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • n-acetylglucosamine-6-sulfatase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 [heparan sulfate]-α-N-acetyl-D-glucosamine 6-O-sulfate[c] + 1 H2O[c] => 1 a [heparan]-N-acetyl-α-D-glucosamine[c] + 1 sulfate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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