Difference between revisions of "PWY-6823"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** at1g17160 ** rib...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4821 PWY-4821] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-82115 TAX-8...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4821 PWY-4821] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-82115 TAX-82115]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
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** ORF
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** UDP-D-xylose biosynthesis
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** at1g17160
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** ribokinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.15 EC-2.7.1.15]
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* Synonym(s):
 
* Synonym(s):
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** UDP-xylose biosynthesis
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** UDPXyl biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''3''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-15318]][c]
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* [[UDP-GLUCURONATE-DECARBOXYLASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 ATP[c] '''+''' 1 α-D-ribofuranose[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 α-D-ribose 5-phosphate[c]
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*** [[Tiso_gene_12394]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* [[Tiso_gene_17974]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7346 PWY-7346]
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** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7346 PWY-7346]
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* [[Tiso_gene_911]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18204]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_82]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_81]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7682]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[RIBOKIN-PWY]], ribose degradation: [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13697 13697]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-4821 PWY-4821]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-82115}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
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{{#set: taxonomic range=TAX-2759}}
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* UNIPROT:
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{{#set: common name=UDP-D-xylose biosynthesis}}
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** [http://www.uniprot.org/uniprot/P44331 P44331]
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{{#set: common name=UDP-xylose biosynthesis|UDPXyl biosynthesis}}
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** [http://www.uniprot.org/uniprot/P36945 P36945]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/Q57849 Q57849]
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
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{{#set: completion rate=33.0}}
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** [http://www.uniprot.org/uniprot/P25332 P25332]
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** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
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** [http://www.uniprot.org/uniprot/O93727 O93727]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=at1g17160}}
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{{#set: common name=ribokinase}}
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{{#set: ec number=EC-2.7.1.15}}
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{{#set: gene associated=Tiso_gene_17974|Tiso_gene_911|Tiso_gene_18204|Tiso_gene_82|Tiso_gene_81|Tiso_gene_7682}}
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{{#set: in pathway=RIBOKIN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:51, 21 March 2018

Pathway PWY-4821

  • taxonomic range:
  • common name:
    • UDP-D-xylose biosynthesis
  • Synonym(s):
    • UDP-xylose biosynthesis
    • UDPXyl biosynthesis

Reaction(s) found

1 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6823&oldid=30788"