Difference between revisions of "PWY-6364"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-METHYL-3-PHYTYL-14-NAPHTHOQUINONE 2-METHYL-3-PHYTYL-14-NAPHTHOQUINONE] == * smiles: ** CC(C)C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** at1g17160 ** rib...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-METHYL-3-PHYTYL-14-NAPHTHOQUINONE 2-METHYL-3-PHYTYL-14-NAPHTHOQUINONE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] ==
−
* smiles:
+
* direction:
−
** CC(C)CCCC(C)CCCC(C)CCCC(C)=CCC2(=C(C(=O)C1(C=CC=CC=1C2=O))C)
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=MBWXNTAXLNYFJB-LKUDQCMESA-N
+
 
* common name:
 
* common name:
−
** phylloquinone
+
** ORF
−
* molecular weight:
+
** at1g17160
−
** 450.703   
+
** ribokinase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.1.15 EC-2.7.1.15]
 
* Synonym(s):
 
* Synonym(s):
−
** 2-methyl-3-phytyl-1,4-naphthoquinone
 
−
** phytonadione
 
−
** phytomenadione
 
−
** 3-phytylmenadione
 
−
** vitamin K1
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[R06859]]
+
** 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[CPD-15318]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
−
* [[1.1.4.1-RXN]]
+
** 1 ATP[c] '''+''' 1 α-D-ribofuranose[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 α-D-ribose 5-phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_911]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17974]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18204]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_82]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_81]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7682]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[RIBOKIN-PWY]], ribose degradation: [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* NCI:
+
* RHEA:
−
** [http://cactus.nci.nih.gov/ncidb2.2/?nsc=270681 270681]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13697 13697]
−
* CAS : 84-80-0
+
* LIGAND-RXN:
−
* Wikipedia : Phylloquinone
+
** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
−
* PUBCHEM:
+
* UNIPROT:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5280483 5280483]
+
** [http://www.uniprot.org/uniprot/P44331 P44331]
−
* HMDB : HMDB03555
+
** [http://www.uniprot.org/uniprot/P36945 P36945]
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/Q57849 Q57849]
−
** [http://www.genome.jp/dbget-bin/www_bget?C02059 C02059]
+
** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/P25332 P25332]
−
** [http://www.chemspider.com/Chemical-Structure.4444124.html 4444124]
+
** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/O93727 O93727]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=583972 583972]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: smiles=CC(C)CCCC(C)CCCC(C)CCCC(C)=CCC2(=C(C(=O)C1(C=CC=CC=1C2=O))C)}}
+
{{#set: common name=ORF}}
−
{{#set: inchi key=InChIKey=MBWXNTAXLNYFJB-LKUDQCMESA-N}}
+
{{#set: common name=at1g17160}}
−
{{#set: common name=phylloquinone}}
+
{{#set: common name=ribokinase}}
−
{{#set: molecular weight=450.703    }}
+
{{#set: ec number=EC-2.7.1.15}}
−
{{#set: common name=2-methyl-3-phytyl-1,4-naphthoquinone|phytonadione|phytomenadione|3-phytylmenadione|vitamin K1}}
+
{{#set: gene associated=Tiso_gene_911|Tiso_gene_17974|Tiso_gene_18204|Tiso_gene_82|Tiso_gene_81|Tiso_gene_7682}}
−
{{#set: produced by=R06859}}
+
{{#set: in pathway=RIBOKIN-PWY}}
−
{{#set: reversible reaction associated=1.1.4.1-RXN}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:51, 21 March 2018

Reaction RIBOKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • at1g17160
    • ribokinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 α-D-ribofuranose[c] => 1 H+[c] + 1 ADP[c] + 1 α-D-ribose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6364&oldid=30795"