Difference between revisions of "Tiso gene 2452"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1303 PWY0-1303] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]...")
(Created page with "Category:Gene == Gene Tiso_gene_5857 == * right end position: ** 2702 * transcription direction: ** NEGATIVE * left end position: ** 56 * centisome position: ** 0.43583158...")
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[[Category:Pathway]]
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[[Category:Gene]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1303 PWY0-1303] ==
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== Gene Tiso_gene_5857 ==
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* taxonomic range:
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* right end position:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** 2702
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* common name:
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* transcription direction:
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** aminopropylcadaverine biosynthesis
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** NEGATIVE
 +
* left end position:
 +
** 56
 +
* centisome position:
 +
** 0.43583158   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reactions associated ==
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'''2''' reactions found over '''2''' reactions in the full pathway
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* Reaction: [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]]
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* [[LYSDECARBOX-RXN]]
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** Source: [[orthology-athaliana]]
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** 1 associated gene(s):
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_10395]]
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* Reaction: [[HACD5]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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* Reaction: [[HACD5m]]
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* [[RXN0-5217]]
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** Source: [[orthology-creinhardtii]]
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** 1 associated gene(s):
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* Reaction: [[HBCHL]]
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*** [[Tiso_gene_17803]]
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** Source: [[orthology-creinhardtii]]
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** 2 reconstruction source(s) associated:
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* Reaction: [[HBCHLm]]
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*** [[orthology-athaliana]]
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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* Reaction: [[HBCO]]
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== Reaction(s) not found ==
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[HMNOS]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[METHYLACYLYLCOA-HYDROXY-RXN]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[OHACYL-COA-DEHYDROG-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
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* Reaction: [[PEROXID-RXN]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-10698]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-10702]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-10703]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-11245]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-11662]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-11667]]
 +
** Source: [[orthology-athaliana]]
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* Reaction: [[RXN-12490]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-12507]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-12570]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-12705]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-12750]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14240]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14266]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14271]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-14275]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-15288]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-16133]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17777]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17781]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17786]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17790]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17793]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17794]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
* Reaction: [[RXN-17797]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17798]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-2425]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-6383]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-8635]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-905]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-2044]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[TIGLYLCOA-HYDROXY-RXN]]
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** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
 +
* [[PWY-6920]]
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* [[P162-PWY]]
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* [[PWY-5177]]
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* [[PWY-6583]]
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* [[VALDEG-PWY]]
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* [[PWY-6883]]
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* [[PWY-7656]]
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* [[PWY-5136]]
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* [[PWY-7778]]
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* [[PWY-7779]]
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* [[PWY-7574]]
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* [[PWY-7094]]
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* [[PWY-7654]]
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* [[P3-PWY]]
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* [[PWY66-391]]
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* [[PWY-5789]]
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* [[PWY-5461]]
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* [[FAO-PWY]]
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* [[CENTFERM-PWY]]
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* [[PWY-6945]]
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* [[PWY0-321]]
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* [[PWY-5743]]
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* [[ILEUDEG-PWY]]
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* [[PWY-5744]]
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* [[PWY-7007]]
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* [[PWY-6435]]
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* [[PWY-7214]]
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* [[PWY-7216]]
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* [[PWY-1361]]
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* [[PWY-5109]]
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* [[PWY-7445]]
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* [[PWY-6946]]
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* [[PWY-81]]
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* [[PWY-6944]]
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* [[PWY-735]]
 +
* [[PWY-7401]]
 +
* [[PWY-6863]]
 +
* [[PWY-3941]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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{{#set: right end position=2702}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY0-1303 PWY0-1303]
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{{#set: transcription direction=NEGATIVE}}
−
{{#set: taxonomic range=TAX-2}}
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{{#set: left end position=56}}
−
{{#set: common name=aminopropylcadaverine biosynthesis}}
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{{#set: centisome position=0.43583158    }}
−
{{#set: reaction found=2}}
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{{#set: reaction associated=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN|HACD5|HACD5m|HBCHL|HBCHLm|HBCO|HMNOS|METHYLACYLYLCOA-HYDROXY-RXN|OHACYL-COA-DEHYDROG-RXN|PEROXID-RXN|RXN-10698|RXN-10702|RXN-10703|RXN-11245|RXN-11662|RXN-11667|RXN-12490|RXN-12507|RXN-12570|RXN-12705|RXN-12750|RXN-14240|RXN-14266|RXN-14271|RXN-14275|RXN-15288|RXN-16133|RXN-17777|RXN-17781|RXN-17786|RXN-17790|RXN-17793|RXN-17794|RXN-17797|RXN-17798|RXN-2425|RXN-6383|RXN-8635|RXN-905|RXN0-2044|TIGLYLCOA-HYDROXY-RXN}}
−
{{#set: total reaction=2}}
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{{#set: pathway associated=PWY-6920|P162-PWY|PWY-5177|PWY-6583|VALDEG-PWY|PWY-6883|PWY-7656|PWY-5136|PWY-7778|PWY-7779|PWY-7574|PWY-7094|PWY-7654|P3-PWY|PWY66-391|PWY-5789|PWY-5461|FAO-PWY|CENTFERM-PWY|PWY-6945|PWY0-321|PWY-5743|ILEUDEG-PWY|PWY-5744|PWY-7007|PWY-6435|PWY-7214|PWY-7216|PWY-1361|PWY-5109|PWY-7445|PWY-6946|PWY-81|PWY-6944|PWY-735|PWY-7401|PWY-6863|PWY-3941}}
−
{{#set: completion rate=100.0}}
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Revision as of 14:52, 21 March 2018

Gene Tiso_gene_5857

  • right end position:
    • 2702
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 56
  • centisome position:
    • 0.43583158
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2452&oldid=30845"