Difference between revisions of "L-3-HYDROXYACYL-COA"

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(Created page with "Category:Gene == Gene Tiso_gene_12892 == * left end position: ** 3018 * transcription direction: ** POSITIVE * right end position: ** 4800 * centisome position: ** 45.3629...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF **...")
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[[Category:Gene]]
+
[[Category:Reaction]]
== Gene Tiso_gene_12892 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] ==
* left end position:
+
* direction:
** 3018
+
** LEFT-TO-RIGHT
* transcription direction:
+
* common name:
** POSITIVE
+
** polyketide_synthase
* right end position:
+
** ORF
** 4800
+
** long_chain_acyl-_synthetase
* centisome position:
+
** acyl-_synthetase
** 45.362995   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
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== Reaction Formula ==
* [[3.2.1.6-RXN]]
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* With identifiers:
** in-silico_annotation
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** 1 [[ATP]][c] '''+''' 1 [[PALMITATE]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[AMP]][c]
***ec-number
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* With common name(s):
* [[3.2.1.73-RXN]]
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** 1 ATP[c] '''+''' 1 palmitate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 AMP[c]
** in-silico_annotation
+
 
***ec-number
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== Genes associated with this reaction  ==
* [[QUINOPRIBOTRANS-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
** in-silico_annotation
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* Gene: [[Tiso_gene_9394]]
***ec-number
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** Source: [[annotation-in-silico_annotation]]
== Pathways associated ==
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*** Assignment: EC-NUMBER
* [[PWY-5316]]
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** Source: [[annotation-experimental_annotation]]
* [[PWY-5653]]
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*** Assignment: EC-NUMBER
* [[PYRIDNUCSYN-PWY]]
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** Source: [[orthology-athaliana]]
* [[PWY-7342]]
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** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12275]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7855]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4191]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
== Pathways ==
 +
* [[PWY-5972]], stearate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
{{#set: left end position=3018}}
+
* RHEA:
{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30754 30754]
{{#set: right end position=4800}}
+
* LIGAND-RXN:
{{#set: centisome position=45.362995    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01280 R01280]
{{#set: reaction associated=3.2.1.6-RXN|3.2.1.73-RXN|QUINOPRIBOTRANS-RXN}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: pathway associated=PWY-5316|PWY-5653|PYRIDNUCSYN-PWY|PWY-7342}}
+
{{#set: common name=polyketide_synthase}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=long_chain_acyl-_synthetase}}
 +
{{#set: common name=acyl-_synthetase}}
 +
{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: gene associated=Tiso_gene_9394|Tiso_gene_13394|Tiso_gene_12275|Tiso_gene_10876|Tiso_gene_7855|Tiso_gene_348|Tiso_gene_136|Tiso_gene_135|Tiso_gene_500|Tiso_gene_4191}}
 +
{{#set: in pathway=PWY-5972|PWY-5971}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:52, 21 March 2018

Reaction RXN-9623

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • ORF
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 palmitate[c] + 1 coenzyme A[c] => 1 diphosphate[c] + 1 palmitoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5972, stearate biosynthesis I (animals and fungi): PWY-5972
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links