Difference between revisions of "Tiso gene 5280"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHACYL-COA-DEHYDROG-RXN OHACYL-COA-DEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHACYL-COA-DEHYDROG-RXN OHACYL-COA-DEHYDROG-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** purine nucleobases degradation I (anaerobic)
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** 3-hydroxyacyl-_dehydrogenase
 +
** hydroxyacyl-coenzyme_a_mitochondrial
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** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
* Synonym(s):
 
* Synonym(s):
−
** purine fermentation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''17''' reactions in the full pathway
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* With identifiers:
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* [[GUANINE-DEAMINASE-RXN]]
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** 1 [[L-3-HYDROXYACYL-COA]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_12280]]
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** 1 a (3S)-3-hydroxyacyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 a 3-oxoacyl-CoA[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[METHENYLTHFCYCLOHYDRO-RXN]]
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* Gene: [[Tiso_gene_5857]]
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** 0 associated gene:
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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** Source: [[annotation-experimental_annotation]]
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* [[RXN-7682]]
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*** Assignment: EC-NUMBER
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** 1 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_11775]]
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* Gene: [[Tiso_gene_18838]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_18839]]
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* [[RXN0-901]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_11775]]
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* Gene: [[Tiso_gene_14262]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.2-RXN 1.2.1.2-RXN]
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* Gene: [[Tiso_gene_14026]]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.3.1.4-RXN 4.3.1.4-RXN]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMYLTHFDEFORMYL-RXN FORMYLTHFDEFORMYL-RXN]
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** Source: [[annotation-experimental_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-FORMIMINOTRANSFERASE-RXN GLYCINE-FORMIMINOTRANSFERASE-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=R127-RXN R127-RXN]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R128-RXN R128-RXN]
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* Gene: [[Tiso_gene_14027]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R13-RXN R13-RXN]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R62-RXN R62-RXN]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R63-RXN R63-RXN]
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* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7566 RXN-7566]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8752 RXN-8752]
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* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8755 RXN-8755]
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** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
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** '''5''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1239}}
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* RHEA:
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{{#set: common name=purine nucleobases degradation I (anaerobic)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22432 22432]
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{{#set: common name=purine fermentation}}
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* PIR:
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{{#set: reaction found=4}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
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{{#set: total reaction=17}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
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{{#set: completion rate=24.0}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55045 A55045]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPGC DEPGC]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4210 JC4210]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4879 JC4879]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40743 S40743]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74114 S74114]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46866 T46866]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01778 R01778]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P21177 P21177]
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** [http://www.uniprot.org/uniprot/Q08426 Q08426]
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** [http://www.uniprot.org/uniprot/Q53924 Q53924]
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** [http://www.uniprot.org/uniprot/P07896 P07896]
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** [http://www.uniprot.org/uniprot/Q61425 Q61425]
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** [http://www.uniprot.org/uniprot/Q16836 Q16836]
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** [http://www.uniprot.org/uniprot/P28793 P28793]
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** [http://www.uniprot.org/uniprot/P22414 P22414]
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** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
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** [http://www.uniprot.org/uniprot/P34439 P34439]
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** [http://www.uniprot.org/uniprot/Q01373 Q01373]
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** [http://www.uniprot.org/uniprot/P55100 P55100]
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** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 +
** [http://www.uniprot.org/uniprot/P00348 P00348]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
 +
{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
 +
{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
 +
{{#set: ec number=EC-1.1.1.35}}
 +
{{#set: gene associated=Tiso_gene_5857|Tiso_gene_18838|Tiso_gene_18839|Tiso_gene_14262|Tiso_gene_14026|Tiso_gene_14027}}
 +
{{#set: in pathway=PWY-5136|PWY-7007|FAO-PWY|PWY66-391}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:53, 21 March 2018

Reaction OHACYL-COA-DEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-hydroxyacyl-_dehydrogenase
    • hydroxyacyl-coenzyme_a_mitochondrial
    • hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7007, methyl ketone biosynthesis (engineered): PWY-7007
    • 3 reactions found over 6 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I: FAO-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5280&oldid=31009"