Difference between revisions of "Tiso gene 12078"

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(Created page with "Category:Gene == Gene Tiso_gene_860 == * left end position: ** 17659 * transcription direction: ** NEGATIVE * right end position: ** 21173 * centisome position: ** 62.6028...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] == * direction: ** LEFT-TO-RIGHT * common name: ** nitrilase * ec number: ** [ht...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_860 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] ==
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* left end position:
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* direction:
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** 17659
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** nitrilase
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* right end position:
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* ec number:
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** 21173
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** [http://enzyme.expasy.org/EC/3.5.5.1 EC-3.5.5.1]
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* centisome position:
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** 62.602806   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3.4.11.14-RXN]]
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* With identifiers:
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** experimental_annotation
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** 1 [[INDOLEYL-CPD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
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***automated-name-match
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* With common name(s):
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* [[3.4.11.2-RXN]]
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** 1 indole-3-acetonitrile[c] '''+''' 2 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 indole-3-acetate[c]
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** in-silico_annotation
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***automated-name-match
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-13677]]
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* Gene: [[Tiso_gene_10996]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-athaliana]]
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* [[RXN-6622]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[RXN-6642]]
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* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
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** in-silico_annotation
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** '''3''' reactions found over '''13''' reactions in the full pathway
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***automated-name-match
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* [[PWY-5026]], indole-3-acetate biosynthesis V (bacteria and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5026 PWY-5026]
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** [[pantograph]]-[[esiliculosus]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Pathways associated ==
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* [[PWYQT-4476]], indole glucosinolate activation (herbivore attack): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4476 PWYQT-4476]
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* [[PWY-7112]]
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** '''1''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-4041]]
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== Reconstruction information  ==
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* [[PWY-4061]]
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* Category: [[orthology]]
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* [[PWY-7559]]
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** Source: [[orthology-athaliana]]
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* [[PWY-6842]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=17659}}
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* LIGAND-RXN:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03093 R03093]
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{{#set: right end position=21173}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=62.602806    }}
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{{#set: common name=nitrilase}}
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{{#set: reaction associated=3.4.11.14-RXN|3.4.11.2-RXN|RXN-13677|RXN-6622|RXN-6642}}
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{{#set: ec number=EC-3.5.5.1}}
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{{#set: pathway associated=PWY-7112|PWY-4041|PWY-4061|PWY-7559|PWY-6842}}
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{{#set: gene associated=Tiso_gene_10996}}
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{{#set: in pathway=PWY-581|PWY-5026|PWYQT-4476}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:54, 21 March 2018

Reaction RXN-1404

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nitrilase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-581, indole-3-acetate biosynthesis II: PWY-581
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-5026, indole-3-acetate biosynthesis V (bacteria and fungi): PWY-5026
    • 1 reactions found over 1 reactions in the full pathway
  • PWYQT-4476, indole glucosinolate activation (herbivore attack): PWYQT-4476
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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